Eukaryotic core promoters and the functional basis of transcription initiation

V Haberle, A Stark - Nature reviews Molecular cell biology, 2018 - nature.com
Abstract RNA polymerase II (Pol II) core promoters are specialized DNA sequences at
transcription start sites of protein-coding and non-coding genes that support the assembly of …

Regulation of ribosomal protein genes: An ordered anarchy

C Petibon, M Malik Ghulam, M Catala… - Wiley Interdisciplinary …, 2021 - Wiley Online Library
Ribosomal protein genes are among the most highly expressed genes in most cell types.
Their products are generally essential for ribosome synthesis, which is the cornerstone for …

Enhancer–core-promoter specificity separates developmental and housekeeping gene regulation

MA Zabidi, CD Arnold, K Schernhuber, M Pagani… - Nature, 2015 - nature.com
Gene transcription in animals involves the assembly of RNA polymerase II at core promoters
and its cell-type-specific activation by enhancers that can be located more distally. However …

The core promoter: At the heart of gene expression

YM Danino, D Even, D Ideses… - Biochimica et Biophysica …, 2015 - Elsevier
The identities of different cells and tissues in multicellular organisms are determined by
tightly controlled transcriptional programs that enable accurate gene expression. The …

Regulatory enhancer–core-promoter communication via transcription factors and cofactors

MA Zabidi, A Stark - Trends in Genetics, 2016 - cell.com
Gene expression is regulated by genomic enhancers that recruit transcription factors and
cofactors to activate transcription from target core promoters. Over the past years, thousands …

Differential dependencies of human RNA polymerase II promoters on TBP, TAF1, TFIIB and XPB

JF Santana, GS Collins, M Parida, DS Luse… - Nucleic acids …, 2022 - academic.oup.com
The effects of rapid acute depletion of components of RNA polymerase II (Pol II) general
transcription factors (GTFs) that are thought to be critical for formation of preinitiation …

Core promoters in transcription: old problem, new insights

AL Roy, DS Singer - Trends in biochemical sciences, 2015 - cell.com
Early studies established that transcription initiates within an approximately 50bp DNA
segment capable of nucleating the assembly of RNA polymerase II (Pol II) and associated …

Transcriptional cofactors display specificity for distinct types of core promoters

V Haberle, CD Arnold, M Pagani, M Rath… - Nature, 2019 - nature.com
Transcriptional cofactors (COFs) communicate regulatory cues from enhancers to promoters
and are central effectors of transcription activation and gene expression. Although some …

The homeostatic regulation of ribosome biogenesis

C Ni, M Buszczak - Seminars in cell & developmental biology, 2023 - Elsevier
The continued integrity of biological systems depends on a balance between
interdependent elements at the molecular, cellular, and organismal levels. This is …

Quantitative imaging of transcription in living Drosophila embryos reveals the impact of core promoter motifs on promoter state dynamics

VL Pimmett, M Dejean, C Fernandez, A Trullo… - Nature …, 2021 - nature.com
Genes are expressed in stochastic transcriptional bursts linked to alternating active and
inactive promoter states. A major challenge in transcription is understanding how promoter …