Smart breeding driven by big data, artificial intelligence, and integrated genomic-enviromic prediction

Y Xu, X Zhang, H Li, H Zheng, J Zhang, MS Olsen… - Molecular Plant, 2022 - cell.com
The first paradigm of plant breeding involves direct selection-based phenotypic observation,
followed by predictive breeding using statistical models for quantitative traits constructed …

The role of regulatory variation in complex traits and disease

FW Albert, L Kruglyak - Nature Reviews Genetics, 2015 - nature.com
We are in a phase of unprecedented progress in identifying genetic loci that cause variation
in traits ranging from growth and fitness in simple organisms to disease in humans …

Integration of summary data from GWAS and eQTL studies predicts complex trait gene targets

Z Zhu, F Zhang, H Hu, A Bakshi, MR Robinson… - Nature …, 2016 - nature.com
Genome-wide association studies (GWAS) have identified thousands of genetic variants
associated with human complex traits. However, the genes or functional DNA elements …

[图书][B] Mendelian randomization: methods for using genetic variants in causal estimation

S Burgess, SG Thompson - 2015 - books.google.com
Presents the Terminology and Methods of Mendelian Randomization for Epidemiological
StudiesMendelian randomization uses genetic instrumental variables to make inferences …

Defining the consequences of genetic variation on a proteome-wide scale

JM Chick, SC Munger, P Simecek, EL Huttlin, K Choi… - Nature, 2016 - nature.com
Genetic variation modulates protein expression through both transcriptional and post-
transcriptional mechanisms. To characterize the consequences of natural genetic diversity …

Learning from co-expression networks: possibilities and challenges

EAR Serin, H Nijveen, HWM Hilhorst… - Frontiers in plant …, 2016 - frontiersin.org
Plants are fascinating and complex organisms. A comprehensive understanding of the
organization, function and evolution of plant genes is essential to disentangle important …

Phenomics: the next challenge

D Houle, DR Govindaraju, S Omholt - Nature reviews genetics, 2010 - nature.com
A key goal of biology is to understand phenotypic characteristics, such as health, disease
and evolutionary fitness. Phenotypic variation is produced through a complex web of …

The genetics of quantitative traits: challenges and prospects

TFC Mackay, EA Stone, JF Ayroles - Nature Reviews Genetics, 2009 - nature.com
A major challenge in current biology is to understand the genetic basis of variation for
quantitative traits. We review the principles of quantitative trait locus mapping and …

Heritability in the genomics era—concepts and misconceptions

PM Visscher, WG Hill, NR Wray - Nature reviews genetics, 2008 - nature.com
Heritability allows a comparison of the relative importance of genes and environment to the
variation of traits within and across populations. The concept of heritability and its definition …

Comparative analysis of proteome and transcriptome variation in mouse

A Ghazalpour, B Bennett, VA Petyuk, L Orozco… - PLoS …, 2011 - journals.plos.org
The relationships between the levels of transcripts and the levels of the proteins they encode
have not been examined comprehensively in mammals, although previous work in plants …