Free energy methods in drug design: prospects of “alchemical perturbation” in medicinal chemistry: miniperspective

BJ Williams-Noonan, E Yuriev… - Journal of medicinal …, 2018 - ACS Publications
Underpinning all drug discovery projects is the interaction between a drug and its target,
usually a protein. Thus, improved methods for predicting the magnitude of protein–ligand …

Frontiers in free‐energy calculations of biological systems

C Chipot - Wiley Interdisciplinary Reviews: Computational …, 2014 - Wiley Online Library
In a matter of three decades, free‐energy calculations have emerged as an indispensable
tool to tackle deep biological questions that experiment alone has left unresolved. In spite of …

Computational study on the drug resistance mechanism against HCV NS3/4A protease inhibitors vaniprevir and MK-5172 by the combination use of molecular …

W Xue, Y Ban, H Liu, X Yao - Journal of Chemical Information and …, 2014 - ACS Publications
Hepatitis C virus (HCV) NS3/4A protease is an important and attractive target for anti-HCV
drug development and discovery. Vaniprevir (phase III clinical trials) and MK-5172 (phase II …

The inhibitory performance of flavonoid cyanidin-3-sambubiocide against H274Y mutation in H1N1 influenza virus

S Kannan, P Kolandaivel - Journal of Biomolecular Structure and …, 2018 - Taylor & Francis
Oseltamivir (Tamiflu) is the most accepted antiviral drug that targets the neuraminidase (NA)
protein to inhibit the viral release from the host cell. Few H1N1 influenza strains with the …

All-atom virus simulations

JA Hadden, JR Perilla - Current opinion in virology, 2018 - Elsevier
Highlights•Viral protein simulations are among the largest all-atom simulations ever
published.•All-atom simulations reveal the dynamics of viral proteins at chemical …

[HTML][HTML] Antiviral activity of subcritical water extract of Brassica juncea against influenza virus A/H1N1 in nonfat milk

NK Lee, JH Lee, SM Lim, KA Lee, YB Kim… - Journal of Dairy …, 2014 - Elsevier
Subcritical water extract (SWE) of Brassica juncea was studied for antiviral effects against
influenza virus A/H1N1 and for the possibility of application as a nonfat milk supplement for …

A Novel Prodrug Strategy Based on Reversibly Degradable Guanidine Imides for High Oral Bioavailability and Prolonged Pharmacokinetics of Broad-Spectrum Anti …

Y Jung, SB Ahn, T An, HM Cha, M Kim… - ACS Central …, 2024 - ACS Publications
We present orally administrable prodrugs (OSC-GCDI s) of guanidino oseltamivir
carboxylate (GOC) based on guanidine cyclic diimide (GCDI) to treat influenza viruses. By …

Molecular modeling and residue interaction network studies on the mechanism of binding and resistance of the HCV NS5B polymerase mutants to VX-222 and …

W Xue, P Jiao, H Liu, X Yao - Antiviral research, 2014 - Elsevier
Abstract Hepatitis C virus (HCV) NS5B protein is an RNA-dependent RNA polymerase
(RdRp) with essential functions in viral genome replication and represents a promising …

Kinetic, thermodynamic, and structural analysis of drug resistance mutations in neuraminidase from the 2009 pandemic influenza virus

J Pokorná, P Pachl, E Karlukova, J Hejdánek… - Viruses, 2018 - mdpi.com
Neuraminidase is the main target for current influenza drugs. Reduced susceptibility to
oseltamivir, the most widely prescribed neuraminidase inhibitor, has been repeatedly …

Molecular basis for differential patterns of drug resistance in influenza N1 and N2 neuraminidase

KL Prachanronarong, A Özen… - Journal of chemical …, 2016 - ACS Publications
Neuraminidase (NA) inhibitors are used for the prevention and treatment of influenza A virus
infections. Two subtypes of NA, N1 and N2, predominate in viruses that infect humans, but …