Adaptive dynamical networks

R Berner, T Gross, C Kuehn, J Kurths, S Yanchuk - Physics Reports, 2023 - Elsevier
It is a fundamental challenge to understand how the function of a network is related to its
structural organization. Adaptive dynamical networks represent a broad class of systems that …

Keystone taxa as drivers of microbiome structure and functioning

S Banerjee, K Schlaeppi… - Nature Reviews …, 2018 - nature.com
Microorganisms have a pivotal role in the functioning of ecosystems. Recent studies have
shown that microbial communities harbour keystone taxa, which drive community …

ggClusterNet: An R package for microbiome network analysis and modularity‐based multiple network layouts

T Wen, P Xie, S Yang, G Niu, X Liu, Z Ding, C Xue… - Imeta, 2022 - Wiley Online Library
The network analysis has attracted increasing attention and interest from ecological
academics, thus it is of great necessity to develop more convenient and powerful tools. For …

Network neuroscience

DS Bassett, O Sporns - Nature neuroscience, 2017 - nature.com
Despite substantial recent progress, our understanding of the principles and mechanisms
underlying complex brain function and cognition remains incomplete. Network neuroscience …

[HTML][HTML] Cautionary notes on the use of co-occurrence networks in soil ecology

M Goberna, M Verdú - Soil Biology and Biochemistry, 2022 - Elsevier
Soil ecology is witnessing exponential growth in the number of studies using co-occurrence
network analysis. Researchers reconstruct networks based on the co-occurrence of taxa or …

[HTML][HTML] Network analysis methods for studying microbial communities: A mini review

MS Matchado, M Lauber, S Reitmeier… - Computational and …, 2021 - Elsevier
Microorganisms including bacteria, fungi, viruses, protists and archaea live as communities
in complex and contiguous environments. They engage in numerous inter-and intra …

Global airborne bacterial community—interactions with Earth's microbiomes and anthropogenic activities

J Zhao, L Jin, D Wu, J Xie, J Li, X Fu… - Proceedings of the …, 2022 - National Acad Sciences
Airborne bacteria are an influential component of the Earth's microbiomes, but their
community structure and biogeographic distribution patterns have yet to be understood. We …

Linking soil fungi to bacterial community assembly in arid ecosystems

S Jiao, H Chu, B Zhang, X Wei, W Chen, G Wei - Imeta, 2022 - Wiley Online Library
Revealing the roles of biotic factors in driving community assembly, which is crucial for the
understanding of biodiversity and ecosystem functions, is a fundamental but infrequently …

Disentangling interactions in the microbiome: a network perspective

M Layeghifard, DM Hwang, DS Guttman - Trends in microbiology, 2017 - cell.com
Microbiota are now widely recognized as being central players in the health of all organisms
and ecosystems, and subsequently have been the subject of intense study. However …

The interconnected rhizosphere: high network complexity dominates rhizosphere assemblages

S Shi, EE Nuccio, ZJ Shi, Z He, J Zhou… - Ecology …, 2016 - Wiley Online Library
While interactions between roots and microorganisms have been intensively studied, we
know little about interactions among root‐associated microbes. We used random matrix …