Machine-learned potentials for next-generation matter simulations

P Friederich, F Häse, J Proppe, A Aspuru-Guzik - Nature Materials, 2021 - nature.com
The choice of simulation methods in computational materials science is driven by a
fundamental trade-off: bridging large time-and length-scales with highly accurate …

Unsupervised learning methods for molecular simulation data

A Glielmo, BE Husic, A Rodriguez, C Clementi… - Chemical …, 2021 - ACS Publications
Unsupervised learning is becoming an essential tool to analyze the increasingly large
amounts of data produced by atomistic and molecular simulations, in material science, solid …

Machine learning for molecular simulation

F Noé, A Tkatchenko, KR Müller… - Annual review of …, 2020 - annualreviews.org
Machine learning (ML) is transforming all areas of science. The complex and time-
consuming calculations in molecular simulations are particularly suitable for an ML …

Quantum chemistry in the age of machine learning

PO Dral - The journal of physical chemistry letters, 2020 - ACS Publications
As the quantum chemistry (QC) community embraces machine learning (ML), the number of
new methods and applications based on the combination of QC and ML is surging. In this …

Enhanced sampling with machine learning

S Mehdi, Z Smith, L Herron, Z Zou… - Annual Review of …, 2024 - annualreviews.org
Molecular dynamics (MD) enables the study of physical systems with excellent
spatiotemporal resolution but suffers from severe timescale limitations. To address this …

Quantum machine learning for chemistry and physics

M Sajjan, J Li, R Selvarajan, SH Sureshbabu… - Chemical Society …, 2022 - pubs.rsc.org
Machine learning (ML) has emerged as a formidable force for identifying hidden but
pertinent patterns within a given data set with the objective of subsequent generation of …

Reweighted autoencoded variational Bayes for enhanced sampling (RAVE)

JML Ribeiro, P Bravo, Y Wang, P Tiwary - The Journal of chemical …, 2018 - pubs.aip.org
Here we propose the reweighted autoencoded variational Bayes for enhanced sampling
(RAVE) method, a new iterative scheme that uses the deep learning framework of variational …

Modeling the formation and growth of atmospheric molecular clusters: A review

J Elm, J Kubečka, V Besel, MJ Jääskeläinen… - Journal of Aerosol …, 2020 - Elsevier
Molecular clusters are ubiquitous constituents of the ambient atmosphere, that can grow into
larger sizes forming new aerosol particles. The formation and growth of small clusters into …

[HTML][HTML] DeePCG: Constructing coarse-grained models via deep neural networks

L Zhang, J Han, H Wang, R Car - The Journal of chemical physics, 2018 - pubs.aip.org
We introduce a general framework for constructing coarse-grained potential models without
ad hoc approximations such as limiting the potential to two-and/or three-body contributions …

Machine learning for collective variable discovery and enhanced sampling in biomolecular simulation

H Sidky, W Chen, AL Ferguson - Molecular Physics, 2020 - Taylor & Francis
Classical molecular dynamics simulates the time evolution of molecular systems through the
phase space spanned by the positions and velocities of the constituent atoms. Molecular …