Accurate ranking of differentially expressed genes by a distribution-free shrinkage approach

R Opgen-Rhein, K Strimmer - Statistical applications in genetics and …, 2007 - degruyter.com
High-dimensional case-control analysis is encountered in many different settings in
genomics. In order to rank genes accordingly, many different scores have been proposed …

Proteomics and metabolomics in renal transplantation‐quo vadis?

R Bohra, J Klepacki, J Klawitter, J Klawitter… - Transplant …, 2013 - Wiley Online Library
The improvement of long‐term transplant organ and patient survival remains a critical
challenge following kidney transplantation. Proteomics and biochemical profiling …

Covariance regression analysis

T Zou, W Lan, H Wang, CL Tsai - Journal of the American Statistical …, 2017 - Taylor & Francis
This article introduces covariance regression analysis for ap-dimensional response vector.
The proposed method explores the regression relationship between the p-dimensional …

[HTML][HTML] Comparison of small n statistical tests of differential expression applied to microarrays

C Murie, O Woody, AY Lee, R Nadon - BMC bioinformatics, 2009 - Springer
Background DNA microarrays provide data for genome wide patterns of expression between
observation classes. Microarray studies often have small samples sizes, however, due to …

Estimation of variances and covariances for high‐dimensional data: a selective review

T Tong, C Wang, Y Wang - Wiley Interdisciplinary Reviews …, 2014 - Wiley Online Library
Estimation of variances and covariances is required for many statistical methods such as t‐
test, principal component analysis and linear discriminant analysis. High‐dimensional data …

A two-sample tree-based test for hierarchically organized genomic signals

P Neuvial, N Randriamihamison… - Journal of the Royal …, 2024 - academic.oup.com
This article addresses a common type of data encountered in genomic studies, where a
signal along a linear chromosome exhibits a hierarchical organization. We propose a novel …

Shrinkage-based diagonal discriminant analysis and its applications in high-dimensional data

H Pang, T Tong, H Zhao - Biometrics, 2009 - academic.oup.com
High-dimensional data such as microarrays have brought us new statistical challenges. For
example, using a large number of genes to classify samples based on a small number of …

[HTML][HTML] Shrinkage-based diagonal Hotelling's tests for high-dimensional small sample size data

K Dong, H Pang, T Tong, MG Genton - Journal of Multivariate Analysis, 2016 - Elsevier
High-throughput expression profiling techniques bring novel tools and also statistical
challenges to genetic research. In addition to detecting differentially expressed genes …

On F-modelling-based empirical Bayes estimation of variances

Y Kwon, Z Zhao - Biometrika, 2023 - academic.oup.com
We consider the problem of empirical Bayes estimation of multiple variances when provided
with sample variances. Assuming an arbitrary prior on the variances, we derive different …

Empirical Bayes confidence intervals shrinking both means and variances

JT Gene Hwang, J Qiu, Z Zhao - Journal of the Royal Statistical …, 2009 - academic.oup.com
We construct empirical Bayes intervals for a large number p of means. The existing intervals
in the literature assume that variances σ i 2 are either equal or unequal but known. When the …