Assembly of Protein Complexes In and On the Membrane with Predicted Spatial Arrangement Constraints
Membrane proteins play crucial roles in various cellular processes, and their interactions
with other proteins in and on the membrane are essential for their proper functioning. While …
with other proteins in and on the membrane are essential for their proper functioning. While …
Frontiers in integrative structural modeling of macromolecular assemblies
K Majila, S Arvindekar, M Jindal, S Viswanath - QRB Discovery, 2025 - cambridge.org
Integrative modeling enables structure determination for large macromolecular assemblies
by combining data from multiple experiments with theoretical and computational predictions …
by combining data from multiple experiments with theoretical and computational predictions …
Frontiers in integrative structural biology: modeling disordered proteins and utilizing in situ data
K Majila, S Arvindekar, M Jindal… - arXiv preprint arXiv …, 2024 - arxiv.org
Integrative modeling enables structure determination for large macromolecular assemblies
by combining data from multiple sources of experiment data with theoretical and …
by combining data from multiple sources of experiment data with theoretical and …
A new discrete-geometry approach for integrative docking of proteins using chemical crosslinks
The structures of protein complexes allow us to understand and modulate the biological
functions of the proteins. Integrative docking is a computational method to obtain the …
functions of the proteins. Integrative docking is a computational method to obtain the …
Predicting the alternative conformation of a known protein structure based on the distance map of AlphaFold2
J Li, Z Zhu, C Song - bioRxiv, 2024 - biorxiv.org
With AlphaFold2 (AF2) becoming the top structural prediction tool, multiple studies have
found that AF2 often favors one conformation state over others in high-precision structure …
found that AF2 often favors one conformation state over others in high-precision structure …
Improving AlphaFold 3 structural modeling by incorporating explicit crosslinks
J Kosinski - bioRxiv, 2024 - biorxiv.org
AlphaFold 3 has significantly advanced the modeling of macromolecular structures,
including proteins, DNA, RNA, and their interactions with small molecules or post …
including proteins, DNA, RNA, and their interactions with small molecules or post …