Protein sequence comparison based on representation on a finite dimensional unit hypercube

S Ghosh, J Pal, C Cattani, B Maji… - Journal of …, 2024 - Taylor & Francis
Numerous techniques are used to compare protein sequences based on the values of the
physiochemical properties of amino acids. In this work, a single physical/chemical property …

An accurate alignment-free protein sequence comparator based on physicochemical properties of amino acids

S Akbari Rokn Abadi, AS Abdosalehi, F Pouyamehr… - Scientific Reports, 2022 - nature.com
Bio-sequence comparators are one of the most basic and significant methods for assessing
biological data, and so, due to the importance of proteins, protein sequence comparators are …

HELIOS: High-speed sequence alignment in optics

E Maleki, S Akbari Rokn Abadi… - PLOS Computational …, 2022 - journals.plos.org
In response to the imperfections of current sequence alignment methods, originated from the
inherent serialism within their corresponding electrical systems, a few optical approaches for …

A time series representation of protein sequences for similarity comparison

C Li, Q Dai, P He - Journal of Theoretical Biology, 2022 - Elsevier
Based on the physicochemical indexes of 20 amino acids and the Hungarian algorithm,
each amino acid was mapped into a vector. And, the protein sequence can be represented …

Use of 2D FFT and DTW in Protein Sequence Comparison

J Pal, S Ghosh, B Maji, DK Bhattacharya - The Protein Journal, 2024 - Springer
Protein sequence comparison remains a challenging work for the researchers owing to the
computational complexity due to the presence of 20 amino acids compared with only four …

[PDF][PDF] Investigating the Evolution and Functionality of Closely Related Wnt Ligands in Drosophila Melanogaster

SR Booth - 2024 - radar.brookes.ac.uk
The Wnt signalling pathway is a fundamental cell-to-cell communication system that plays a
pivotal role in orchestrating diverse developmental processes across metazoans. There are …

Mapping biomolecular sequences: Graphical representations-their origins, applications and future prospects

A Nandy - Combinatorial Chemistry & High Throughput …, 2022 - ingentaconnect.com
The exponential growth in the depositories of biological sequence data has generated an
urgent need to store, retrieve and analyse the data efficiently and effectively for which the …

A Graphical Representation of Protein Sequences and Its Applications

PA He, L Yan, T Zhu - … of the Fourth International Conference on …, 2020 - dl.acm.org
Based on the chaos game representation, a three-dimensional graphical representation of
protein sequence was proposed to describe protein sequence. Then, a numerical …

[PDF][PDF] Evolutionary aspect of protein sequence network based on the 2D representation of amino acids

S Sharma, BK Boruah, T Ali - Network Biology, 2022 - academia.edu
For the comparative analysis of proteins, their proper clustering, and evolutionary
relationships require analysis of their sequences. We used a mathematical parameter …

Genetic Similarity Analysis Based on Positive and Negative Sequence Patterns of DNA

Y Lu, L Zhao, Z Li, X Dong - Symmetry, 2020 - mdpi.com
Similarity analysis of DNA sequences can clarify the homology between sequences and
predict the structure of, and relationship between, them. At the same time, the frequent …