[HTML][HTML] The birth of the 3D genome during early embryonic development

CB Hug, JM Vaquerizas - Trends in Genetics, 2018 - cell.com
The 3D structure of chromatin in the nucleus is important for the regulation of gene
expression and the correct deployment of developmental programs. The differentiation of …

The transgenic RNAi project at Harvard Medical School: resources and validation

LA Perkins, L Holderbaum, R Tao, Y Hu, R Sopko… - Genetics, 2015 - academic.oup.com
To facilitate large-scale functional studies in Drosophila, the Drosophila Transgenic RNAi
Project (TRiP) at Harvard Medical School (HMS) was established along with several goals …

Setting the stage for development: the maternal-to-zygotic transition in Drosophila

MM Harrison, AJ Marsh, CA Rushlow - Genetics, 2023 - academic.oup.com
The zygote has a daunting task ahead of itself; it must develop from a single cell (fertilized
egg) into a fully functioning adult with a multitude of different cell types. In the beginning, the …

[HTML][HTML] Chromatin architecture emerges during zygotic genome activation independent of transcription

CB Hug, AG Grimaldi, K Kruse, JM Vaquerizas - Cell, 2017 - cell.com
Chromatin architecture is fundamental in regulating gene expression. To investigate when
spatial genome organization is first established during development, we examined …

One prophage WO gene rescues cytoplasmic incompatibility in Drosophila melanogaster

JD Shropshire, J On, EM Layton… - Proceedings of the …, 2018 - National Acad Sciences
Wolbachia are maternally inherited, intracellular bacteria at the forefront of vector control
efforts to curb arbovirus transmission. In international field trials, the cytoplasmic …

Zelda overcomes the high intrinsic nucleosome barrier at enhancers during Drosophila zygotic genome activation

Y Sun, CY Nien, K Chen, HY Liu, J Johnston… - Genome …, 2015 - genome.cshlp.org
The Drosophila genome activator Vielfaltig (Vfl), also known as Zelda (Zld), is thought to
prime enhancers for activation by patterning transcription factors (TFs). Such priming is …

[HTML][HTML] Sequence-independent self-assembly of germ granule mRNAs into homotypic clusters

T Trcek, TE Douglas, M Grosch, Y Yin, WVI Eagle… - Molecular cell, 2020 - cell.com
Summary mRNAs enriched in membraneless condensates provide functional
compartmentalization within cells. The mechanisms that recruit transcripts to condensates …

FlyPrimerBank: An Online Database for Drosophila melanogaster Gene Expression Analysis and Knockdown Evaluation of RNAi Reagents

Y Hu, R Sopko, M Foos, C Kelley… - G3: Genes …, 2013 - academic.oup.com
The evaluation of specific endogenous transcript levels is important for understanding
transcriptional regulation. More specifically, it is useful for independent confirmation of …

[HTML][HTML] Dissecting the sharp response of a canonical developmental enhancer reveals multiple sources of cooperativity

J Park, J Estrada, G Johnson, BJ Vincent, C Ricci-Tam… - Elife, 2019 - elifesciences.org
Developmental enhancers integrate graded concentrations of transcription factors (TFs) to
create sharp gene expression boundaries. Here we examine the hunchback P2 (HbP2) …

Molecular basis of mRNA transport by a kinesin-1–atypical tropomyosin complex

L Dimitrova-Paternoga, PKA Jagtap… - Genes & …, 2021 - genesdev.cshlp.org
Kinesin-1 carries cargos including proteins, RNAs, vesicles, and pathogens over long
distances within cells. The mechanochemical cycle of kinesins is well described, but how …