Homing endonuclease structure and function

BL Stoddard - Quarterly reviews of biophysics, 2005 - cambridge.org
Homing endonucleases are encoded by open reading frames that are embedded within
group I, group II and archael introns, as well as inteins (intervening sequences that are …

[HTML][HTML] Colicin import into E. coli cells: a model system for insights into the import mechanisms of bacteriocins

YC Kim, AW Tarr, CN Penfold - … et Biophysica Acta (BBA)-Molecular Cell …, 2014 - Elsevier
Bacteriocins are a diverse group of ribosomally synthesized protein antibiotics produced by
most bacteria. They range from small lanthipeptides produced by lactic acid bacteria to …

DNA binding and cleavage by the HNH homing endonuclease I-HmuI

BW Shen, M Landthaler, DA Shub… - Journal of molecular …, 2004 - Elsevier
The structure of I-HmuI, which represents the last family of homing endonucleases without a
defining crystallographic structure, has been determined in complex with its DNA target. A …

[HTML][HTML] DNA binding and cleavage by the periplasmic nuclease Vvn: a novel structure with a known active site

CL Li, LI Hor, ZF Chang, LC Tsai, WZ Yang… - The EMBO …, 2003 - embopress.org
Abstract The Vibrio vulnificus nuclease, Vvn, is a non‐specific periplasmic nuclease capable
of digesting DNA and RNA. The crystal structure of Vvn and that of Vvn mutant H80A in …

Structural and functional characterization of mitochondrial EndoG, a sugar non-specific nuclease which plays an important role during apoptosis

P Schäfer, SR Scholz, O Gimadutdinow… - Journal of molecular …, 2004 - Elsevier
Combining sequence analysis, structure prediction, and site-directed mutagenesis, we have
investigated the mechanism of catalysis and substrate binding by the apoptotic …

[HTML][HTML] APOL1 toxin, innate immunity, and kidney injury

S Limou, PD Dummer, GW Nelson, JB Kopp… - Kidney international, 2015 - Elsevier
The discovery that two common APOL1 alleles were strongly associated with nondiabetic
kidney diseases in African descent populations led to hope for improved diagnosis and …

DOT2: Macromolecular docking with improved biophysical models

VA Roberts, EE Thompson, ME Pique… - Journal of …, 2013 - Wiley Online Library
Computational docking is a useful tool for predicting macromolecular complexes, which are
often difficult to determine experimentally. Here, we present the DOT2 software suite, an …

Type II restriction endonuclease R. KpnI is a member of the HNH nuclease superfamily

M Saravanan, JM Bujnicki, IA Cymerman… - Nucleic acids …, 2004 - academic.oup.com
The restriction endonuclease (REase) R. KpnI is an orthodox Type IIP enzyme, which binds
to DNA in the absence of metal ions and cleaves the DNA sequence 5′-GGTAC^ C-3′ in …

DNA binding and degradation by the HNH protein ColE7

KC Hsia, KF Chak, PH Liang, YS Cheng, WY Ku… - Structure, 2004 - cell.com
The bacterial toxin ColE7 bears an HNH motif which has been identified in hundreds of
prokaryotic and eukaryotic endonucleases, involved in DNA homing, restriction, repair, or …

Structural and functional characterization of deep-sea thermophilic bacteriophage GVE2 HNH endonuclease

L Zhang, D Xu, Y Huang, X Zhu, M Rui, T Wan… - Scientific reports, 2017 - nature.com
HNH endonucleases in bacteriophages play a variety of roles in the phage lifecycle as key
components of phage DNA packaging machines. The deep-sea thermophilic bacteriophage …