Next-generation sequencing for confronting virus pandemics

J Quer, S Colomer-Castell, C Campos, C Andrés… - Viruses, 2022 - mdpi.com
Virus pandemics have happened, are happening and will happen again. In recent decades,
the rate of zoonotic viral spillover into humans has accelerated, mirroring the expansion of …

In vitro and in vivo characterization of SARS-CoV-2 strains resistant to nirmatrelvir

M Kiso, Y Furusawa, R Uraki, M Imai… - Nature …, 2023 - nature.com
Nirmatrelvir, an oral antiviral agent that targets a SARS-CoV-2 main protease (3CLpro), is
clinically useful against infection with SARS-CoV-2 including its omicron variants. Since …

The role of RASs/RVs in the current management of HCV

K Malandris, G Kalopitas, E Theocharidou… - Viruses, 2021 - mdpi.com
The approval of combination therapies with direct-acting antiviral (DAA) regimens has led to
significant progress in the field of hepatitis C virus (HCV) treatment. Although most patients …

[HTML][HTML] Real-world effectiveness of voxilaprevir/velpatasvir/sofosbuvir in patients following DAA failure

C Graf, R D'Ambrosio, E Degasperi, S Paolucci… - JHEP Reports, 2024 - Elsevier
Background & Aims Voxilaprevir/velpatasvir/sofosbuvir (VOX/VEL/SOF) is highly effective for
re-treatment of direct-acting antiviral (DAA)-experienced patients with chronic HCV infection …

MIP-based electrochemical sensor for direct detection of hepatitis C virus via E2 envelope protein

M Antipchik, J Reut, AG Ayankojo, A Öpik, V Syritski - Talanta, 2022 - Elsevier
Hepatitis C is the most common liver disease caused by Hepatitis C virus (HCV), and can
evolve into serious health problems eg cirrhosis and hepatocellular carcinoma. Nowadays …

SARS-CoV-2 mutant spectra at different depth levels reveal an overwhelming abundance of low frequency mutations

B Martínez-González, ME Soria, L Vázquez-Sirvent… - Pathogens, 2022 - mdpi.com
Populations of RNA viruses are composed of complex and dynamic mixtures of variant
genomes that are termed mutant spectra or mutant clouds. This applies also to SARS-CoV …

Bioinformatic tools for NGS-based metagenomics to improve the clinical diagnosis of emerging, re-emerging and new viruses

M Ibañez-Lligoña, S Colomer-Castell… - Viruses, 2023 - mdpi.com
Epidemics and pandemics have occurred since the beginning of time, resulting in millions of
deaths. Many such disease outbreaks are caused by viruses. Some viruses, particularly …

Atypical mutational spectrum of SARS-CoV-2 replicating in the presence of ribavirin

P Somovilla, C García-Crespo… - Antimicrobial Agents …, 2023 - Am Soc Microbiol
We report that ribavirin exerts an inhibitory and mutagenic activity on SARS-CoV-2-infecting
Vero cells, with a therapeutic index higher than 10. Deep sequencing analysis of the mutant …

SARS-CoV-2 point mutation and deletion spectra and their association with different disease outcomes

B Martínez-González, ME Soria… - Microbiology …, 2022 - Am Soc Microbiol
Mutant spectra of RNA viruses are important to understand viral pathogenesis and response
to selective pressures. There is a need to characterize the complexity of mutant spectra in …

Emergence and persistence of resistance-associated substitutions in HCV GT3 patients failing direct-acting antivirals

S Mushtaq, AH Hashmi, A Khan… - Frontiers in …, 2022 - frontiersin.org
Background: The hepatitis C virus has a high mutation rate, which results in the emergence
of resistance-associated substitutions (RASs). Despite direct-acting antivirals (DAAs) efforts …