Comparative assessment of genes driving cancer and somatic evolution in non-cancer tissues: an update of the Network of Cancer Genes (NCG) resource

L Dressler, M Bortolomeazzi, MR Keddar, H Misetic… - Genome biology, 2022 - Springer
Background Genetic alterations of somatic cells can drive non-malignant clone formation
and promote cancer initiation. However, the link between these processes remains unclear …

[HTML][HTML] The role of fibroblast growth factor 19 in hepatocellular carcinoma

Z Chen, L Jiang, L Liang, K Koral, Q Zhang… - The American Journal of …, 2021 - Elsevier
Hepatocellular carcinoma (HCC) is the fifth most common type of cancer and the third
leading cause of cancer-related deaths worldwide. Liver resection or liver transplantation is …

Comprehensive analyses reveal TKI-induced remodeling of the tumor immune microenvironment in EGFR/ALK-positive non-small-cell lung cancer

Y Fang, Y Wang, D Zeng, S Zhi, T Shu, N Huang… - …, 2021 - Taylor & Francis
Tyrosine kinase inhibitors (TKI) play a pivotal role in the treatment of non-small-cell lung
cancer (NSCLC) with mutations in epidermal growth factor receptor (EGFR) and …

Applying large language models for causal structure learning in non small cell lung cancer

N Naik, A Khandelwal, M Joshi, M Atre… - 2024 IEEE 12th …, 2024 - ieeexplore.ieee.org
Causal discovery is becoming a key part in medical AI research. These methods can
enhance healthcare by identifying causal links between biomarkers, demographics …

Genome wide DNA methylation analysis identifies novel molecular subgroups and predicts survival in neuroblastoma

H Lalchungnunga, W Hao, JM Maris… - British Journal of …, 2022 - nature.com
Background Neuroblastoma is the most common malignancy in infancy, accounting for 15%
of childhood cancer deaths. Outcome for the high-risk disease remains poor. DNA …

Machine Learning Predicts Oxaliplatin Benefit in Early Colon Cancer

L Chen, Y Wang, C Cai, Y Ding, RS Kim… - Journal of Clinical …, 2024 - ascopubs.org
PURPOSE A combination of fluorouracil, leucovorin, and oxaliplatin (FOLFOX) is the
standard for adjuvant therapy of resected early-stage colon cancer (CC). Oxaliplatin leads to …

Whole-exome sequencing in eccrine porocarcinoma indicates promising therapeutic strategies

E Denisova, D Westphal, HM Surowy, F Meier… - Cancer gene …, 2022 - nature.com
Malignant sweat gland tumours are rare, with the most common form being Eccrine
porocarcinoma (EP). To investigate the mutational landscape of EP, we performed whole …

From genome to phenome: Predicting multiple cancer phenotypes based on somatic genomic alterations via the genomic impact transformer

Y Tao, C Cai, WW Cohen, X Lu - PACIFIC SYMPOSIUM ON …, 2019 - World Scientific
Cancers are mainly caused by somatic genomic alterations (SGAs) that perturb cellular
signaling systems and eventually activate oncogenic processes. Therefore, understanding …

Redoxhigh phenotype mediated by KEAP1/STK11/SMARCA4/NRF2 mutations diminishes tissue-resident memory CD8+ T cells and attenuates the efficacy of …

XW Wei, C Lu, YC Zhang, X Fan, CR Xu… - …, 2024 - Taylor & Francis
Metabolism reprogramming within the tumor microenvironment (TME) can have a profound
impact on immune cells. Identifying the association between metabolic phenotypes and …

The role of network science in glioblastoma

MB Lopes, EP Martins, S Vinga, BM Costa - Cancers, 2021 - mdpi.com
Simple Summary Knowledge extraction from cancer genomic studies is continuously
challenged by the fast-growing technological advances generating high-dimensional data …