Identification and functional annotation of long intergenic non-coding RNAs in Brassicaceae

K Palos, AC Nelson Dittrich, L Yu, JR Brock… - The Plant …, 2022 - academic.oup.com
Long intergenic noncoding RNAs (lincRNAs) are a large yet enigmatic class of eukaryotic
transcripts that can have critical biological functions. The wealth of RNA-sequencing (RNA …

The dimorphic diaspore model Aethionema arabicum (Brassicaceae): Distinct molecular and morphological control of responses to parental and germination …

JO Chandler, PKI Wilhelmsson… - The Plant …, 2024 - academic.oup.com
Plants in habitats with unpredictable conditions often have diversified bet-hedging strategies
that ensure fitness over a wider range of variable environmental factors. A striking example …

Single Nucleotide Polymorphism Charting of P. patens Reveals Accumulation of Somatic Mutations During in vitro Culture on the Scale of Natural Variation by …

FB Haas, N Fernandez-Pozo, R Meyberg… - Frontiers in Plant …, 2020 - frontiersin.org
Introduction: Physcomitrium patens (Hedw.) Mitten (previously known as Physcomitrella
patens) was collected by HLK Whitehouse in Gransden Wood (Huntingdonshire, United …

Aethionema arabicum genome annotation using PacBio full‐length transcripts provides a valuable resource for seed dormancy and Brassicaceae evolution research

N Fernandez‐Pozo, T Metz, JO Chandler… - The Plant …, 2021 - Wiley Online Library
Aethionema arabicum is an important model plant for Brassicaceae trait evolution,
particularly of seed (development, regulation, germination, dormancy) and fruit …

A tale of two morphs: developmental patterns and mechanisms of seed coat differentiation in the dimorphic diaspore model Aethionema arabicum (Brassicaceae)

W Arshad, T Lenser, PKI Wilhelmsson… - The Plant …, 2021 - Wiley Online Library
The developmental transition from a fertilized ovule to a dispersed diaspore (seed or fruit)
involves complex differentiation processes of the ovule's integuments leading to the diversity …

Genomes of Meniocus linifolius and Tetracme quadricornis reveal the ancestral karyotype and genomic features of core Brassicaceae

J Liu, SZ Zhou, YL Liu, BY Zhao, D Yu, MC Zhong… - Plant …, 2024 - Elsevier
Brassicaceae represents an important plant family from both a scientific and economic
perspective. However, genomic features related to the early diversification of this family have …

Genomic Blocks in Aethionema arabicum Support Arabideae as Next Diverging Clade in Brassicaceae

N Walden, TP Nguyen, T Mandáková… - Frontiers in Plant …, 2020 - frontiersin.org
The tribe Aethionemeae is sister to all other crucifers, making it a crucial group for
unraveling genome evolution and phylogenetic relationships within the crown group …

High-Density Genetic Linkage Mapping of Lepidium Based on Genotyping-by-Sequencing SNPs and Segregating Contig Tag Haplotypes

M Geleta, C Gustafsson, JC Glaubitz… - Frontiers in Plant …, 2020 - frontiersin.org
Lepidium campestre has been targeted for domestication as future oilseed and catch crop.
Three hundred eighty plants comprising genotypes of L. campestre, Lepidium …

Applying machine learning to classify the origins of gene duplications

MTW McKibben, MS Barker - Polyploidy: Methods and Protocols, 2023 - Springer
Nearly all lineages of land plants have experienced at least one whole-genome duplication
(WGD) in their history. The legacy of these ancient WGDs is still observable in the …

Single‐molecule real‐time sequencing of the full‐length transcriptome of purple garlic (Allium sativum L. cv. Leduzipi) and identification of serine O‐acetyltransferase …

L Wang, C Zhang, W Yin, W Wei… - Journal of the …, 2022 - Wiley Online Library
Abstract BACKGROUND Garlic (Allium sativum L.), whose bioactive components are mainly
organosulfur compounds (OSCs), is a herbaceous perennial widely consumed as a green …