Agnostic sequencing for detection of viral pathogens
NPG Gauthier, SD Chorlton, M Krajden… - Clinical microbiology …, 2023 - Am Soc Microbiol
The advent of next-generation sequencing (NGS) technologies has expanded our ability to
detect and analyze microbial genomes and has yielded novel molecular approaches for …
detect and analyze microbial genomes and has yielded novel molecular approaches for …
Making waves: Wastewater surveillance of SARS-CoV-2 in an endemic future
Wastewater-based surveillance (WBS) has been widely used as a public health tool to
monitor the emergence and spread of SARS-CoV-2 infections in populations during the …
monitor the emergence and spread of SARS-CoV-2 infections in populations during the …
Multiple introductions of SARS-CoV-2 alpha and delta variants into white-tailed deer in Pennsylvania
AD Marques, S Sherrill-Mix, JK Everett, H Adhikari… - MBio, 2022 - Am Soc Microbiol
The SARS-CoV-2 pandemic began by viral spillover from animals to humans; today multiple
animal species are known to be susceptible to infection. White-tailed deer, Odocoileus …
animal species are known to be susceptible to infection. White-tailed deer, Odocoileus …
[HTML][HTML] City-wide wastewater genomic surveillance through the successive emergence of SARS-CoV-2 Alpha and Delta variants
FS Brunner, MR Brown, I Bassano, H Denise… - Water research, 2022 - Elsevier
Genomic surveillance of SARS-CoV-2 has provided a critical evidence base for public
health decisions throughout the pandemic. Sequencing data from clinical cases has helped …
health decisions throughout the pandemic. Sequencing data from clinical cases has helped …
COVID-19 monitoring with sparse sampling of sewered and non-sewered wastewater in urban and rural communities
Equitable SARS-CoV-2 surveillance in low-resource communities lacking centralized
sewers is critical as wastewater-based epidemiology (WBE) progresses. However, large …
sewers is critical as wastewater-based epidemiology (WBE) progresses. However, large …
SARS-CoV-2 exposure in Norway rats (Rattus norvegicus) from New York city
ABSTRACT Millions of Norway rats (Rattus norvegicus) inhabit New York City (NYC),
presenting the potential for transmission of severe acute respiratory syndrome coronavirus 2 …
presenting the potential for transmission of severe acute respiratory syndrome coronavirus 2 …
From Alpha to Omicron BA. 2: New digital RT-PCR approach and challenges for SARS-CoV-2 VOC monitoring and normalization of variant dynamics in wastewater
S Wurtzer, M Levert, E Dhenain, H Accrombessi… - Science of the Total …, 2022 - Elsevier
Throughout the COVID-19 pandemic, new variants have continuously emerged and spread
in populations. Among these, variants of concern (VOC) have been the main culprits of …
in populations. Among these, variants of concern (VOC) have been the main culprits of …
Highly sensitive wastewater surveillance of SARS-CoV-2 variants by targeted next-generation amplicon sequencing provides early warning of incursion in Victoria …
The future of the COVID pandemic and its public health and societal impact will be
determined by the profile and spread of emerging variants and the timely identification and …
determined by the profile and spread of emerging variants and the timely identification and …
[HTML][HTML] SARS-CoV-2 concentration in wastewater consistently predicts trends in COVID-19 case counts by at least two days across multiple WWTP scales
CL Swift, M Isanovic, KEC Velez, RS Norman - Environmental Advances, 2023 - Elsevier
Wastewater surveillance of SARS-CoV-2 has proven instrumental in mitigating the spread of
COVID-19 by providing an economical and equitable approach to disease surveillance …
COVID-19 by providing an economical and equitable approach to disease surveillance …
Baseline sequencing surveillance of public clinical testing, hospitals, and community wastewater reveals rapid emergence of SARS-CoV-2 omicron variant of concern …
MF Smith, SC Holland, MB Lee, JC Hu, NC Pham… - Mbio, 2023 - Am Soc Microbiol
The adaptive evolution of SARS-CoV-2 variants is driven by selection for increased viral
fitness in transmissibility and immune evasion. Understanding the dynamics of how an …
fitness in transmissibility and immune evasion. Understanding the dynamics of how an …