Beyond assembly: the increasing flexibility of single-molecule sequencing technology

PW Hook, W Timp - Nature Reviews Genetics, 2023 - nature.com
The maturation of high-throughput short-read sequencing technology over the past two
decades has shaped the way genomes are studied. Recently, single-molecule, long-read …

Liquid biopsy, ctDNA diagnosis through NGS

C Lin, X Liu, B Zheng, R Ke, CM Tzeng - Life, 2021 - mdpi.com
Liquid biopsy with circulating tumor DNA (ctDNA) profiling by next-generation sequencing
holds great promise to revolutionize clinical oncology. It relies on the basis that ctDNA …

Detecting cell-of-origin and cancer-specific methylation features of cell-free DNA from Nanopore sequencing

E Katsman, S Orlanski, F Martignano, I Fox-Fisher… - Genome Biology, 2022 - Springer
Abstract The Oxford Nanopore (ONT) platform provides portable and rapid genome
sequencing, and its ability to natively profile DNA methylation without complex sample …

Real‐time analysis of the cancer genome and fragmentome from plasma and urine cell‐free DNA using nanopore sequencing

Y van Der Pol, NA Tantyo, N Evander… - EMBO molecular …, 2023 - embopress.org
Cell‐free DNA (cfDNA) can be isolated and sequenced from blood and/or urine of cancer
patients. Conventional short‐read sequencing lacks deployability and speed and can be …

Nanopore sequencing: Flourishing in its teenage years

T Zhang, H Li, M Jiang, H Hou, Y Gao, Y Li… - Journal of Genetics and …, 2024 - Elsevier
Over the past decade, nanopore sequencing has experienced significant advancements
and changes, transitioning from an initially emerging technology to a significant instrument …

The evolution of affordable technologies in liquid biopsy diagnostics: the key to clinical implementation

G Alexandrou, KT Mantikas, R Allsopp, CA Yapeter… - Cancers, 2023 - mdpi.com
Simple Summary This review aims to highlight the usage of circulating tumour DNA and
circulating tumour cells in various manners for the care of cancer patients. The different …

Resolving complex structural variants via nanopore sequencing

S Romagnoli, N Bartalucci, AM Vannucchi - Frontiers in Genetics, 2023 - frontiersin.org
The recent development of high-throughput sequencing platforms provided impressive
insights into the field of human genetics and contributed to considering structural variants …

Liquid biopsy in lung cancer: biomarkers for the management of recurrence and metastasis

VGP Souza, A Forder, LJ Brockley… - International Journal of …, 2023 - mdpi.com
Liquid biopsies have emerged as a promising tool for the detection of metastases as well as
local and regional recurrence in lung cancer. Liquid biopsy tests involve analyzing a …

Classification of brain tumors by nanopore sequencing of cell-free DNA from cerebrospinal fluid

AK Afflerbach, C Rohrandt, B Brändl… - Clinical …, 2024 - academic.oup.com
Background Molecular brain tumor diagnosis is usually dependent on tissue biopsies or
resections. This can pose several risks associated with anesthesia or neurosurgery …

Nanopore sequencing technology and its applications

P Zheng, C Zhou, Y Ding, B Liu, L Lu, F Zhu… - MedComm, 2023 - Wiley Online Library
Since the development of Sanger sequencing in 1977, sequencing technology has played a
pivotal role in molecular biology research by enabling the interpretation of biological genetic …