Structural insights into nuclear transcription by eukaryotic DNA-dependent RNA polymerases

M Girbig, AD Misiaszek, CW Müller - Nature Reviews Molecular Cell …, 2022 - nature.com
The eukaryotic transcription apparatus synthesizes a staggering diversity of RNA molecules.
The labour of nuclear gene transcription is, therefore, divided among multiple DNA …

[HTML][HTML] Gene regulation in the immediate-early response process

S Bahrami, F Drabløs - Advances in biological regulation, 2016 - Elsevier
Immediate-early genes (IEGs) can be activated and transcribed within minutes after
stimulation, without the need for de novo protein synthesis, and they are stimulated in …

Controlling gene expression with deep generative design of regulatory DNA

J Zrimec, X Fu, AS Muhammad, C Skrekas… - Nature …, 2022 - nature.com
Abstract Design of de novo synthetic regulatory DNA is a promising avenue to control gene
expression in biotechnology and medicine. Using mutagenesis typically requires screening …

Structural basis of transcription initiation by RNA polymerase II

S Sainsbury, C Bernecky, P Cramer - Nature reviews Molecular cell …, 2015 - nature.com
Transcription of eukaryotic protein-coding genes commences with the assembly of a
conserved initiation complex, which consists of RNA polymerase II (Pol II) and the general …

Identification of the m6Am methyltransferase PCIF1 reveals the location and functions of m6Am in the transcriptome

K Boulias, D Toczydłowska-Socha, BR Hawley… - Molecular cell, 2019 - cell.com
Summary mRNAs are regulated by nucleotide modifications that influence their cellular fate.
Two of the most abundant modified nucleotides are N 6-methyladenosine (m 6 A), found …

Alternative splicing and protein diversity: plants versus animals

S Chaudhary, W Khokhar, I Jabre, ASN Reddy… - Frontiers in plant …, 2019 - frontiersin.org
Plants, unlike animals, exhibit a very high degree of plasticity in their growth and
development and employ diverse strategies to cope with the variations during diurnal cycles …

Tuning gene expression to changing environments: from rapid responses to evolutionary adaptation

L López-Maury, S Marguerat, J Bähler - Nature Reviews Genetics, 2008 - nature.com
Organisms are constantly exposed to a wide range of environmental changes, including
both short-term changes during their lifetime and longer-term changes across generations …

[HTML][HTML] Regulation of gene expression via the core promoter and the basal transcriptional machinery

T Juven-Gershon, JT Kadonaga - Developmental biology, 2010 - Elsevier
The RNA polymerase II core promoter is a structurally and functionally diverse
transcriptional regulatory element. There are two main strategies for transcription initiation …

The locus of evolution: evo devo and the genetics of adaptation

HE Hoekstra, JA Coyne - Evolution, 2007 - academic.oup.com
An important tenet of evolutionary developmental biology (“evo devo”) is that adaptive
mutations affecting morphology are more likely to occur in the cis-regulatory regions than in …

DeePromoter: robust promoter predictor using deep learning

M Oubounyt, Z Louadi, H Tayara, KT Chong - Frontiers in genetics, 2019 - frontiersin.org
The promoter region is located near the transcription start sites and regulates transcription
initiation of the gene by controlling the binding of RNA polymerase. Thus, promoter region …