Principles of protein stability and their application in computational design

A Goldenzweig, SJ Fleishman - Annual review of biochemistry, 2018 - annualreviews.org
Proteins are increasingly used in basic and applied biomedical research. Many proteins,
however, are only marginally stable and can be expressed in limited amounts, thus …

Chaperonin mechanisms: Multiple and (mis) understood?

A Horovitz, TH Reingewertz, J Cuéllar… - Annual review of …, 2022 - annualreviews.org
The chaperonins are ubiquitous and essential nanomachines that assist in protein folding in
an ATP-driven manner. They consist of two back-to-back stacked oligomeric rings with …

Designed active-site library reveals thousands of functional GFP variants

JY Weinstein, C Martí-Gómez, R Lipsh-Sokolik… - Nature …, 2023 - nature.com
Mutations in a protein active site can lead to dramatic and useful changes in protein activity.
The active site, however, is sensitive to mutations due to a high density of molecular …

Bis-sulfonamido-2-phenylbenzoxazoles Validate the GroES/EL Chaperone System as a Viable Antibiotic Target

J Godek, J Sivinski, ER Watson, F Lebario… - Journal of the …, 2024 - ACS Publications
We recently reported on small-molecule inhibitors of the GroES/GroEL chaperone system as
potential antibiotics against Escherichia coli and the ESKAPE pathogens but were unable to …

Community-wide experimental evaluation of the PROSS stability-design method

Y Peleg, R Vincentelli, BM Collins, KE Chen… - Journal of molecular …, 2021 - Elsevier
Recent years have seen a dramatic improvement in protein-design methodology.
Nevertheless, most methods demand expert intervention, limiting their widespread adoption …

Successes and challenges in simulating the folding of large proteins

A Gershenson, S Gosavi, P Faccioli… - Journal of Biological …, 2020 - ASBMB
Computational simulations of protein folding can be used to interpret experimental folding
results, to design new folding experiments, and to test the effects of mutations and small …

Systematic In Vivo Characterization of Fluorescent Protein Maturation in Budding Yeast

P Guerra, LA Vuillemenot, B Rae, V Ladyhina… - ACS synthetic …, 2022 - ACS Publications
Fluorescent protein (FP) maturation can limit the accuracy with which dynamic intracellular
processes are captured and reduce the in vivo brightness of a given FP in fast-dividing cells …

Friends in need: How chaperonins recognize and remodel proteins that require folding assistance

G Stan, GH Lorimer, D Thirumalai - Frontiers in Molecular …, 2022 - frontiersin.org
Chaperonins are biological nanomachines that help newly translated proteins to fold by
rescuing them from kinetically trapped misfolded states. Protein folding assistance by the …

A diminished hydrophobic effect inside the GroEL/ES cavity contributes to protein substrate destabilization

I Korobko, RB Eberle, M Roy… - Proceedings of the …, 2022 - National Acad Sciences
Confining compartments are ubiquitous in biology, but there have been few experimental
studies on the thermodynamics of protein folding in such environments. Recently, we …

Influence of fluorescent protein maturation on FRET measurements in living cells

B Liu, SN Mavrova, J van den Berg, SK Kristensen… - ACS …, 2018 - ACS Publications
Förster resonance energy transfer (FRET)-based sensors are a valuable tool to quantify
cell biology, yet it remains necessary to identify and prevent potential artifacts in order to …