Multibody terms in protein coarse-grained models: A top-down perspective

I Zaporozhets, C Clementi - The Journal of Physical Chemistry B, 2023 - ACS Publications
Coarse-grained models allow computational investigation of biomolecular processes
occurring on long time and length scales, intractable with atomistic simulation. Traditionally …

[PDF][PDF] Depletion assisted hemin affinity (DAsHA) proteomics reveals an expanded landscape of heme-binding proteins in the human proteome

H Kim, CM Moore, S Mestre-Fos, DA Hanna… - Metallomics, 2023 - academic.oup.com
Heme b (iron protoporphyrin IX) plays important roles in biology as a metallocofactor and
signaling molecule. However, the targets of heme signaling and the network of proteins that …

In silico prediction of heme binding in proteins

NA Marson, AE Gallio, SK Mandal… - Journal of Biological …, 2024 - ASBMB
The process of heme binding to a protein is prevalent in almost all forms of life to control
many important biological properties, such as O 2-binding, electron transfer, gas sensing or …

Exploring Abeta42 Monomer Diffusion Dynamics on Fibril Surfaces through Molecular Simulations

YW Ma, GF Wang, HY Chen, MY Tsai - bioRxiv, 2024 - biorxiv.org
This study provides critical insights into the role of surface-mediated secondary processes in
Alzheimer's disease, particularly regarding the aggregation of Abeta42 peptides. Employing …

[PDF][PDF] Depletion Assisted Hemin Affinity (DAsHA) Proteomics Reveals an Expanded Landscape of Heme Binding Proteins

MP Torres - 2022 - scholar.archive.org
Heme b (iron protoporphyrin IX) plays important roles in biology as a metallocofactor and
signaling molecule. However, the targets of heme signaling and the network of proteins that …