Ultra-high-performance liquid chromatography high-resolution mass spectrometry variants for metabolomics research

L Perez de Souza, S Alseekh, F Scossa, AR Fernie - Nature Methods, 2021 - nature.com
Ultra-high-performance liquid chromatography high-resolution mass spectrometry (UHPLC–
HRMS) variants currently represent the best tools to tackle the challenges of complexity and …

Caffeoylquinic acids: Chemistry, biosynthesis, occurrence, analytical challenges, and bioactivity

A Alcázar Magaña, N Kamimura… - The plant …, 2021 - Wiley Online Library
Caffeoylquinic acids (CQAs) are specialized plant metabolites we encounter in our daily life.
Humans consume CQAs in mg‐to‐gram quantities through dietary consumption of plant …

WikiPathways: a multifaceted pathway database bridging metabolomics to other omics research

DN Slenter, M Kutmon, K Hanspers… - Nucleic acids …, 2018 - academic.oup.com
WikiPathways (wikipathways. org) captures the collective knowledge represented in
biological pathways. By providing a database in a curated, machine readable way, omics …

The origin and evolution of plant flavonoid metabolism

K Yonekura-Sakakibara, Y Higashi… - Frontiers in plant …, 2019 - frontiersin.org
During their evolution, plants have acquired the ability to produce a huge variety of
compounds. Unlike the specialized metabolites that accumulate in limited numbers of …

IMPPAT: A curated database of I ndian M edicinal P lants, P hytochemistry A nd T herapeutics

K Mohanraj, BS Karthikeyan, RP Vivek-Ananth… - Scientific reports, 2018 - nature.com
Phytochemicals of medicinal plants encompass a diverse chemical space for drug
discovery. India is rich with a flora of indigenous medicinal plants that have been used for …

The structure and function of major plant metabolite modifications

S Wang, S Alseekh, AR Fernie, J Luo - Molecular Plant, 2019 - cell.com
Plants produce a myriad of structurally and functionally diverse metabolites that play many
different roles in plant growth and development and in plant response to continually …

ChEBI in 2016: Improved services and an expanding collection of metabolites

J Hastings, G Owen, A Dekker, M Ennis… - Nucleic acids …, 2016 - academic.oup.com
ChEBI is a database and ontology containing information about chemical entities of
biological interest. It currently includes over 46 000 entries, each of which is classified within …

Hydrogen rearrangement rules: computational MS/MS fragmentation and structure elucidation using MS-FINDER software

H Tsugawa, T Kind, R Nakabayashi… - Analytical …, 2016 - ACS Publications
Compound identification from accurate mass MS/MS spectra is a bottleneck for untargeted
metabolomics. In this study, we propose nine rules of hydrogen rearrangement (HR) during …

Metabolomics in the context of plant natural products research: From sample preparation to metabolite analysis

MA Salem, L Perez de Souza, A Serag, AR Fernie… - Metabolites, 2020 - mdpi.com
Plant-derived natural products have long been considered a valuable source of lead
compounds for drug development. Natural extracts are usually composed of hundreds to …

Current understanding of the pathways of flavonoid biosynthesis in model and crop plants

T Tohge, LP de Souza, AR Fernie - Journal of experimental …, 2017 - academic.oup.com
Flavonoids are a signature class of secondary metabolites formed from a relatively simple
collection of scaffolds. They are extensively decorated by chemical reactions including …