Improving eDNA yield and inhibitor reduction through increased water volumes and multi-filter isolation techniques

ME Hunter, JA Ferrante, G Meigs-Friend, A Ulmer - Scientific Reports, 2019 - nature.com
To inform management and conservation decisions, environmental DNA (eDNA) methods
are used to detect genetic material shed into the water by imperiled and invasive species …

Laboratory techniques used for entomopathogenic fungi: Hypocreales

GD Inglis, J Enkerli, MS Goettel - Manual of techniques in …, 2012 - books.google.com
Recent taxonomic studies on fungi using molecular techniques have provided important
information on their phylogenies and new classifications (Chapter VI). Many genera of …

qPCR as a powerful tool for microbial food spoilage quantification: Significance for food quality

N Martínez, MC Martín, A Herrero, M Fernández… - Trends in Food Science …, 2011 - Elsevier
The use of real time quantitative PCR (qPCR) has recently been extended to food science.
The literature has mainly focused on its use in ensuring food safety. However, it offers a …

The effect of soil texture on richness and diversity of bacterial communities

JF Chau, AC Bagtzoglou, MR Willig - Environmental Forensics, 2011 - Taylor & Francis
Bacterial diversity in soil is high relative to more homogeneous environments (eg, freshwater
or marine habitats). Isolation imparted by fragmented aquatic microhabitats in unsaturated …

ddPCR surpasses classical qPCR technology in quantitating bacteria and fungi in the environment

D Wang, S Wang, X Du, Q He, Y Liu… - Molecular Ecology …, 2022 - Wiley Online Library
Quantitative real‐time PCR (qPCR) has been widely used in quantifying bacterial and fungal
populations in various ecosystems, as well as the fungi to bacteria ratio (F: B ratio). Recently …

Inhibition of DNA polymerases used in Q-PCR by structurally different soil-derived humic substances

CN Albers, A Jensen, J Bælum… - Geomicrobiology …, 2013 - Taylor & Francis
Real-time PCR for the quantitative assessment of microbial genes in DNA extracted from
environmental samples is increasingly being used in microbial ecology studies. A significant …

Wastewater surveillance of SARS-CoV-2 at a Canadian university campus and the impact of wastewater characteristics on viral RNA detection

LC Bitter, R Kibbee, GC Jiménez, B Örmeci - Acs Es&T Water, 2022 - ACS Publications
Because of the increased population density, high-risk behavior of young students, and
lower vaccination rates, university campuses are considered hot spots for COVID-19 …

A re-evaluation of dilution for eliminating PCR inhibition in soil DNA samples

H Wang, J Qi, D Xiao, Z Wang, K Tian - Soil Biology and Biochemistry, 2017 - Elsevier
Quantitative real-time PCR (qPCR) analysis for accurate quantification of targeted microbial
genes is compromised by the presence of co-extracted inhibitors from soil samples. Dilution …

An improved molecular diagnostic assay for canine and feline dermatophytosis

C Cafarchia, RB Gasser, LA Figueredo… - Medical …, 2013 - academic.oup.com
The few studies attempting to specifically characterize dermatophytes from hair samples of
dogs and cats using PCR-based methodology relied on sequence-based analysis of …

Linear polyacrylamide is highly efficient in precipitating and purifying environmental and ancient DNA

F Maixner, C Mitterer, HY Jäger… - Methods in Ecology …, 2022 - Wiley Online Library
Nucleic acid extraction from complex environmental and ancient tissue material is prone to
co‐extract inhibitory substances that make further molecular analysis difficult or impossible …