Nonequilibrium physics in biology

X Fang, K Kruse, T Lu, J Wang - Reviews of Modern Physics, 2019 - APS
Life is characterized by a myriad of complex dynamic processes allowing organisms to grow,
reproduce, and evolve. Physical approaches for describing systems out of thermodynamic …

From actin waves to mechanism and back: how theory aids biological understanding

C Beta, L Edelstein-Keshet, N Gov, A Yochelis - Elife, 2023 - elifesciences.org
Actin dynamics in cell motility, division, and phagocytosis is regulated by complex factors
with multiple feedback loops, often leading to emergent dynamic patterns in the form of …

Traveling waves in actin dynamics and cell motility

J Allard, A Mogilner - Current opinion in cell biology, 2013 - Elsevier
Much of current understanding of cell motility arose from studying steady treadmilling of actin
arrays. Recently, there have been a growing number of observations of a more complex …

Model for self-polarization and motility of keratocyte fragments

F Ziebert, S Swaminathan… - Journal of The Royal …, 2012 - royalsocietypublishing.org
Computational modelling of cell motility on substrates is a formidable challenge; regulatory
pathways are intertwined and forces that influence cell motion are not fully quantified …

Quantitative structured illumination microscopy via a physical model-based background filtering algorithm reveals actin dynamics

Y Mo, K Wang, L Li, S Xing, S Ye, J Wen… - Nature …, 2023 - nature.com
Despite the prevalence of superresolution (SR) microscopy, quantitative live-cell SR
imaging that maintains the completeness of delicate structures and the linearity of …

Actin waves: origin of cell polarization and migration?

N Inagaki, H Katsuno - Trends in cell biology, 2017 - cell.com
Actin filaments and associated proteins undergo wave-like movement in various cell types.
Recent studies with cutting-edge analyses, including live-cell imaging, biophysical …

Biased excitable networks: how cells direct motion in response to gradients

PA Iglesias, PN Devreotes - Current opinion in cell biology, 2012 - Elsevier
The actin cytoskeleton in motile cells has many of the hallmarks of an excitable medium,
including the presence of propagating waves. This excitable behavior can account for the …

Protein self-organization: lessons from the min system

M Loose, K Kruse, P Schwille - Annual review of biophysics, 2011 - annualreviews.org
One of the most fundamental features of biological systems is probably their ability to self-
organize in space and time on different scales. Despite many elaborate theoretical models …

Intracellular oscillations and waves

C Beta, K Kruse - Annual Review of Condensed Matter Physics, 2017 - annualreviews.org
Dynamic processes in living cells are highly organized in space and time. Unraveling the
underlying molecular mechanisms of spatiotemporal pattern formation remains one of the …

Evolutionarily conserved coupling of adaptive and excitable networks mediates eukaryotic chemotaxis

M Tang, M Wang, C Shi, PA Iglesias… - Nature …, 2014 - nature.com
Numerous models explain how cells sense and migrate towards shallow chemoattractant
gradients. Studies show that an excitable signal transduction network acts as a pacemaker …