Microsatellites in pursuit of microbial genome evolution

AF Saeed, R Wang, S Wang - Frontiers in microbiology, 2016 - frontiersin.org
Microsatellites or short sequence repeats are widespread genetic markers which are
hypermutable 1–6 bp long short nucleotide motifs. Significantly, their applications in …

Markers in time and space: a review of the last decade of plant phylogeographic approaches

AB Morris, J Shaw - Molecular Ecology, 2018 - Wiley Online Library
Plant studies comprise a relatively small proportion of the phylogeographic literature, likely
as a consequence of the fundamental challenges posed by the complex genomic structures …

Efficient development of highly polymorphic microsatellite markers based on polymorphic repeats in transcriptome sequences of multiple individuals

M Vukosavljev, GD Esselink… - Molecular Ecology …, 2015 - Wiley Online Library
The first hurdle in developing microsatellite markers, cloning, has been overcome by next‐
generation sequencing. The second hurdle is testing to differentiate polymorphic from …

A review of the endangered mollusks transcriptome under the threatened species initiative of Korea

HH Patnaik, MK Sang, JE Park, DK Song, JY Jeong… - Genes & Genomics, 2023 - Springer
Transcriptome studies for conservation of endangered mollusks is a proactive approach
towards managing threats and uncertainties facing these species in natural environments …

Genetic assignment to stock of stranded common bottlenose dolphins in southeastern Louisiana after the Deepwater Horizon oil spill

PE Rosel, LA Wilcox, C Sinclair, TR Speakman… - Endangered Species …, 2017 - int-res.com
Degradation of marine ecosystems is an increasing problem and extends beyond nearshore
coastal waters with significant human development. However, measuring ecosystem …

Microsatellite development from genome skimming and transcriptome sequencing: comparison of strategies and lessons from frog species

Y Xia, W Luo, S Yuan, Y Zheng, X Zeng - BMC genomics, 2018 - Springer
Background Even though microsatellite loci frequently have been isolated using recently
developed next-generation sequencing (NGS) techniques, this task is still difficult because …

Transcriptome characterization and SSR discovery in the giant spiny frog Quasipaa spinosa

X Wang, Y Xie, W Hu, Z Wei, X Wei, H Yuan, H Yao… - Gene, 2022 - Elsevier
The giant spiny frog Quasipaa spinosa (Amphibia: Ranidae) is a large unique frog species
found mainly in southern China with a low amount of fat and high protein, and it has become …

Genomic sequencing and microsatellite marker development for Boswellia papyrifera, an economically important but threatened tree native to dry tropical forests

AB Addisalem, GD Esselink, F Bongers… - AoB Plants, 2015 - academic.oup.com
Microsatellite (or simple sequence repeat, SSR) markers are highly informative DNA
markers often used in conservation genetic research. Next-generation sequencing enables …

Transcriptome Characterization for Non-Model Endangered Lycaenids, Protantigius superans and Spindasis takanosis, Using Illumina HiSeq 2500 Sequencing

BB Patnaik, HJ Hwang, SW Kang, SY Park… - International Journal of …, 2015 - mdpi.com
The Lycaenidae butterflies, Protantigius superans and Spindasis takanosis, are endangered
insects in Korea known for their symbiotic association with ants. However, necessary …

Fine-scale ecological and genetic population structure of two whitefish (Coregoninae) species in the vicinity of industrial thermal emissions

CF Graham, RL Eberts, TD Morgan, DR Boreham… - PloS one, 2016 - journals.plos.org
Thermal pollution from industrial processes can have negative impacts on the spawning and
development of cold-water fish. Point sources of thermal effluent may need to be managed …