Distinct assembly processes and microbial communities constrain soil organic carbon formation

MA Anthony, TW Crowther, DS Maynard… - One earth, 2020 - cell.com
Soil stores more carbon (C) than all vegetation and the atmosphere combined. Soil C stocks
are broadly shaped by temperature, moisture, soil physical characteristics, vegetation, and …

Exploiting unconventional prokaryotic hosts for industrial biotechnology

B Blombach, A Grünberger, F Centler, N Wierckx… - Trends in …, 2022 - cell.com
Developing cost-efficient biotechnological processes is a major challenge in replacing fossil-
based industrial production processes. The remarkable progress in genetic engineering …

Mutualism-enhancing mutations dominate early adaptation in a two-species microbial community

S Venkataram, HY Kuo, EFY Hom… - Nature Ecology & …, 2023 - nature.com
Species interactions drive evolution while evolution shapes these interactions. The resulting
eco-evolutionary dynamics and their repeatability depend on how adaptive mutations …

Carbon use efficiency and its temperature sensitivity covary in soil bacteria

G Pold, LA Domeignoz-Horta, EW Morrison, SD Frey… - MBio, 2020 - Am Soc Microbiol
The strategy that microbial decomposers take with respect to using substrate for growth
versus maintenance is one essential biological determinant of the propensity of carbon to …

Energetic scaling in microbial growth

S Calabrese, A Chakrawal, S Manzoni… - Proceedings of the …, 2021 - National Acad Sciences
Microbial growth is a clear example of organization and structure arising in nonequilibrium
conditions. Due to the complexity of the microbial metabolic network, elucidating the …

Functional Decomposition of Metabolism allows a system-level quantification of fluxes and protein allocation towards specific metabolic functions

M Mori, C Cheng, BR Taylor, H Okano… - Nature Communications, 2023 - nature.com
Quantifying the contribution of individual molecular components to complex cellular
processes is a grand challenge in systems biology. Here we establish a general theoretical …

Evolution of Pseudomonas aeruginosa toward higher fitness under standard laboratory conditions

I Grekov, JG Thöming, A Kordes, S Häussler - The ISME journal, 2021 - academic.oup.com
Identifying genetic factors that contribute to the evolution of adaptive phenotypes in
pathogenic bacteria is key to understanding the establishment of infectious diseases. In this …

Bacterial fitness landscapes stratify based on proteome allocation associated with discrete aero-types

K Chen, A Anand, C Olson, TE Sandberg… - PLoS computational …, 2021 - journals.plos.org
The fitness landscape is a concept commonly used to describe evolution towards optimal
phenotypes. It can be reduced to mechanistic detail using genome-scale models (GEMs) …

Vitreoscilla Haemoglobin: A Tool to Reduce Overflow Metabolism

H Taymaz-Nikerel, AR Lara - Microorganisms, 2021 - mdpi.com
Overflow metabolism is a phenomenon extended in nature, ranging from microbial to cancer
cells. Accumulation of overflow metabolites pose a challenge for large-scale bioprocesses …

Enhanced nutrient uptake is sufficient to drive emergent cross-feeding between bacteria in a synthetic community

RK Fritts, JT Bird, MG Behringer, A Lipzen… - The ISME …, 2020 - academic.oup.com
Interactive microbial communities are ubiquitous, influencing biogeochemical cycles and
host health. One widespread interaction is nutrient exchange, or cross-feeding, wherein …