Single-cell technologies: From research to application

L Wen, G Li, T Huang, W Geng, H Pei, J Yang, M Zhu… - The Innovation, 2022 - cell.com
In recent years, more and more single-cell technologies have been developed. A vast
amount of single-cell omics data has been generated by large projects, such as the Human …

Plant synthetic biology innovations for biofuels and bioproducts

Y Yang, TA Chaffin, AH Ahkami, E Blumwald… - Trends in …, 2022 - cell.com
Plant-based biosynthesis of fuels, chemicals, and materials promotes environmental
sustainability, which includes decreases in greenhouse gas emissions, water pollution, and …

Dictionary learning for integrative, multimodal and scalable single-cell analysis

Y Hao, T Stuart, MH Kowalski, S Choudhary… - Nature …, 2024 - nature.com
Mapping single-cell sequencing profiles to comprehensive reference datasets provides a
powerful alternative to unsupervised analysis. However, most reference datasets are …

<? sty\usepackage {wasysym}?> scPlantDB: a comprehensive database for exploring cell types and markers of plant cell atlases

Z He, Y Luo, X Zhou, T Zhu, Y Lan… - Nucleic Acids …, 2024 - academic.oup.com
Recent advancements in single-cell RNA sequencing (scRNA-seq) technology have
enabled the comprehensive profiling of gene expression patterns at the single-cell level …

Spatially resolved transcriptomic analysis of the germinating barley grain

M Peirats-Llobet, C Yi, LC Liew… - Nucleic Acids …, 2023 - academic.oup.com
Seeds are a vital source of calories for humans and a unique stage in the life cycle of
flowering plants. During seed germination, the embryo undergoes major developmental …

[HTML][HTML] Analysis of meristems and plant regeneration at single-cell resolution

RY Liao, JW Wang - Current opinion in plant biology, 2023 - Elsevier
Rapid development of high-throughput single-cell RNA sequencing (scRNA-seq)
technologies offers exciting opportunities to reveal new and rare cell types, previously …

Unraveling plant–microbe symbioses using single-cell and spatial transcriptomics

K Serrano, F Tedeschi, SU Andersen… - Trends in Plant Science, 2024 - cell.com
Plant–microbe symbioses require intense interaction and genetic coordination to
successfully establish in specific cell types of the host and symbiont. Traditional RNA-seq …

Detection of the Arabidopsis Proteome and Its Post-translational Modifications and the Nature of the Unobserved (Dark) Proteome in PeptideAtlas

KJ van Wijk, T Leppert, Z Sun, A Kearly… - Journal of proteome …, 2023 - ACS Publications
This study describes a new release of the Arabidopsis thaliana PeptideAtlas proteomics
resource (build 2023–10) providing protein sequence coverage, matched mass …

Resolving plant development in space and time with single-cell genomics

TM Nolan, R Shahan - Current opinion in plant biology, 2023 - Elsevier
Single-cell genomics technologies are ushering in a new research era. In this review, we
summarize the benefits and current challenges of using these technologies to probe the …

Gene regulatory networks shape developmental plasticity of root cell types under water extremes in rice

MA Reynoso, AT Borowsky, GC Pauluzzi, E Yeung… - Developmental Cell, 2022 - cell.com
Understanding how roots modulate development under varied irrigation or rainfall is crucial
for development of climate-resilient crops. We established a toolbox of tagged rice lines to …