Phylogenetic classification of bony fishes

R Betancur-R, EO Wiley, G Arratia, A Acero… - BMC evolutionary …, 2017 - Springer
Background Fish classifications, as those of most other taxonomic groups, are being
transformed drastically as new molecular phylogenies provide support for natural groups …

[HTML][HTML] Mitochondrial genome organization and vertebrate phylogenetics

SL Pereira - Genetics and Molecular biology, 2000 - SciELO Brasil
With the advent of DNA sequencing techniques the organization of the vertebrate
mitochondrial genome shows variation between higher taxonomic levels. The most …

MitoFish and MitoAnnotator: a mitochondrial genome database of fish with an accurate and automatic annotation pipeline

W Iwasaki, T Fukunaga, R Isagozawa… - Molecular biology …, 2013 - academic.oup.com
Mitofish is a database of fish mitochondrial genomes (mitogenomes) that includes powerful
and precise de novo annotations for mitogenome sequences. Fish occupy an important …

Mesozoic origin and 'out-of-India'radiation of ricefishes (Adrianichthyidae)

K Yamahira, S Ansai, R Kakioka… - Biology …, 2021 - royalsocietypublishing.org
The Indian subcontinent has an origin geologically different from Eurasia, but many
terrestrial animal and plant species on it have congeneric or sister species in other parts of …

Structure and variation of the mitochondrial genome of fishes

TP Satoh, M Miya, K Mabuchi, M Nishida - BMC genomics, 2016 - Springer
Background The mitochondrial (mt) genome has been used as an effective tool for
phylogenetic and population genetic analyses in vertebrates. However, the structure and …

Major patterns of higher teleostean phylogenies: a new perspective based on 100 complete mitochondrial DNA sequences

M Miya, H Takeshima, H Endo, NB Ishiguro… - Molecular phylogenetics …, 2003 - Elsevier
A recent preliminary study using complete mitochondrial DNA sequences from 48 species of
teleosts has suggested that higher teleostean phylogenies should be reinvestigated on the …

Mitogenomic exploration of higher teleostean phylogenies: a case study for moderate-scale evolutionary genomics with 38 newly determined complete mitochondrial …

M Miya, A Kawaguchi, M Nishida - Molecular Biology and …, 2001 - academic.oup.com
Although adequate resolution of higher-level relationships of organisms apparently requires
longer DNA sequences than those currently being analyzed, limitations of time and …

Use of mitogenomic information in teleostean molecular phylogenetics: a tree-based exploration under the maximum-parsimony optimality criterion

M Miya, M Nishida - Molecular Phylogenetics and Evolution, 2000 - Elsevier
We explored the phylogenetic utility and limits of the individual and concatenated
mitochondrial genes for reconstructing the higher-level relationships of teleosts, using the …

Mitogenomic evolution and interrelationships of the Cypriniformes (Actinopterygii: Ostariophysi): the first evidence toward resolution of higher-level relationships of the …

K Saitoh, T Sado, RL Mayden, N Hanzawa… - Journal of molecular …, 2006 - Springer
Fishes of the order Cypriniformes are almost completely restricted to freshwater bodies and
number> 3400 species placed in 5 families, each with poorly defined subfamilies and/or …

Body plan convergence in the evolution of skates and rays (Chondrichthyes: Batoidea)

NC Aschliman, M Nishida, M Miya, JG Inoue… - Molecular Phylogenetics …, 2012 - Elsevier
Skates, rays and allies (Batoidea) comprise more than half of the species diversity and much
of the morphological disparity among chondrichthyan fishes, the sister group to all other …