Mechanisms of copper homeostasis in bacteria

JM Argüello, D Raimunda… - Frontiers in cellular and …, 2013 - frontiersin.org
Copper is an important micronutrient required as a redox co-factor in the catalytic centers of
enzymes. However, free copper is a potential hazard because of its high chemical reactivity …

On the specificity of protein–protein interactions in the context of disorder

K Teilum, JG Olsen, BB Kragelund - Biochemical Journal, 2021 - portlandpress.com
With the increased focus on intrinsically disordered proteins (IDPs) and their large
interactomes, the question about their specificity—or more so on their multispecificity—arise …

Polyelectrolyte interactions enable rapid association and dissociation in high-affinity disordered protein complexes

A Sottini, A Borgia, MB Borgia, K Bugge… - Nature …, 2020 - nature.com
Highly charged intrinsically disordered proteins can form complexes with very high affinity in
which both binding partners fully retain their disorder and dynamics, exemplified by the …

Protein dynamics of human RPA and RAD51 on ssDNA during assembly and disassembly of the RAD51 filament

CJ Ma, B Gibb, YH Kwon, P Sung… - Nucleic acids …, 2017 - academic.oup.com
Homologous recombination (HR) is a crucial pathway for double-stranded DNA break (DSB)
repair. During the early stages of HR, the newly generated DSB ends are processed to yield …

Meddling with metal sensors: Fur-family proteins as signaling hubs

CH Steingard, JD Helmann - Journal of Bacteriology, 2023 - Am Soc Microbiol
The ferric uptake regulator (Fur) protein is the founding member of the FUR superfamily of
metalloregulatory proteins that control metal homeostasis in bacteria. FUR proteins regulate …

EPR spectroscopy detects various active state conformations of the transcriptional regulator CueR

H Sameach, S Ghosh… - Angewandte …, 2019 - Wiley Online Library
The interactions between proteins and their specific DNA sequences are the basis of many
cellular processes. Hence, developing methods to build an atomic level picture of these …

Concentration-and chromosome-organization-dependent regulator unbinding from DNA for transcription regulation in living cells

TY Chen, AG Santiago, W Jung, Ł Krzemiński… - Nature …, 2015 - nature.com
Binding and unbinding of transcription regulators at operator sites constitute a primary
mechanism for gene regulation. While many cellular factors are known to regulate their …

Facilitated dissociation of transcription factors from single DNA binding sites

RI Kamar, EJ Banigan, A Erbas… - Proceedings of the …, 2017 - National Acad Sciences
The binding of transcription factors (TFs) to DNA controls most aspects of cellular function,
making the understanding of their binding kinetics imperative. The standard description of …

EPR spectroscopy provides new insights into complex biological reaction mechanisms

L Hofmann, S Ruthstein - The Journal of Physical Chemistry B, 2022 - ACS Publications
In the last 20 years, the use of electron paramagnetic resonance (EPR) has made a
pronounced and lasting impact in the field of structural biology. The advantage of EPR …

Multiple-binding-site mechanism explains concentration-dependent unbinding rates of DNA-binding proteins

CE Sing, M Olvera de la Cruz… - Nucleic acids research, 2014 - academic.oup.com
Recent work has demonstrated concentration-dependent unbinding rates of proteins from
DNA, using fluorescence visualization of the bacterial nucleoid protein Fis [Graham et …