Chemical exchange in biomacromolecules: past, present, and future

AG Palmer III - Journal of magnetic resonance, 2014 - Elsevier
The perspective reviews quantitative investigations of chemical exchange phenomena in
proteins and other biological macromolecules using NMR spectroscopy, particularly …

Protein conformational populations and functionally relevant substates

A Ramanathan, A Savol, V Burger… - Accounts of chemical …, 2014 - ACS Publications
Functioning proteins do not remain fixed in a unique structure, but instead they sample a
range of conformations facilitated by motions within the protein. Even in the native state, a …

Kinetic resolution of the atomic 3D structures formed by ground and excited conformational states in an RNA dynamic ensemble

R Roy, A Geng, H Shi, DK Merriman… - Journal of the …, 2023 - ACS Publications
Knowing the 3D structures formed by the various conformations populating the RNA free-
energy landscape, their relative abundance, and kinetic interconversion rates is required to …

Picosecond to millisecond structural dynamics in human ubiquitin

K Lindorff-Larsen, P Maragakis, S Piana… - The Journal of …, 2016 - ACS Publications
Human ubiquitin has been extensively characterized using a variety of experimental and
computational methods and has become an important model for studying protein dynamics …

Combining experimental and simulation data of molecular processes via augmented Markov models

S Olsson, H Wu, F Paul… - Proceedings of the …, 2017 - National Acad Sciences
Accurate mechanistic description of structural changes in biomolecules is an increasingly
important topic in structural and chemical biology. Markov models have emerged as a …

Relaxation dynamics of a protein solution investigated by dielectric spectroscopy

M Wolf, R Gulich, P Lunkenheimer, A Loidl - Biochimica et Biophysica Acta …, 2012 - Elsevier
In the present work, we provide a dielectric study on two differently concentrated aqueous
lysozyme solutions in the frequency range from 1MHz to 40GHz and for temperatures from …

Distribution of pico-and nanosecond motions in disordered proteins from nuclear spin relaxation

SN Khan, C Charlier, R Augustyniak, N Salvi… - Biophysical journal, 2015 - cell.com
Intrinsically disordered proteins and intrinsically disordered regions (IDRs) are ubiquitous in
the eukaryotic proteome. The description and understanding of their conformational …

Nanosecond time scale motions in proteins revealed by high-resolution NMR relaxometry

C Charlier, SN Khan, T Marquardsen… - Journal of the …, 2013 - ACS Publications
Understanding the molecular determinants underlying protein function requires the
characterization of both structure and dynamics at atomic resolution. Nuclear relaxation …

Allosteric switch regulates protein–protein binding through collective motion

CA Smith, D Ban, S Pratihar, K Giller… - Proceedings of the …, 2016 - National Acad Sciences
Many biological processes depend on allosteric communication between different parts of a
protein, but the role of internal protein motion in propagating signals through the structure …

Entropy transfer between residue pairs and allostery in proteins: quantifying allosteric communication in ubiquitin

A Hacisuleyman, B Erman - PLoS computational biology, 2017 - journals.plos.org
It has recently been proposed by Gunasakaran et al. that allostery may be an intrinsic
property of all proteins. Here, we develop a computational method that can determine and …