The MinION is a recent-to-market handheld nanopore sequencer. It can be used to
determine the whole genome of a target virus in a biological sample. Its Read Until feature …

The study of multiple “omes,” such as the genome, transcriptome, proteome, and
metabolome has become widespread in biomedical research. High‐throughput techniques …

Genomics is playing an important role in transforming healthcare. Genetic data, however, is
being produced at a rate that far outpaces Moore's Law. Many efforts have been made to …

We now need more than ever to make genome analysis more intelligent. We need to read,
analyze, and interpret our genomes not only quickly, but also accurately and efficiently …

This work seeks to leverage Processing-with-storage-technology (PWST) to accelerate a key
bioinformatics kernel called k-mer counting, which involves processing large files of …

Pairwise sequence alignment is one of the most fundamental and computationally intensive
steps in genome analysis. With the improving costs and throughput of third-generation …

Systolic arrays have been widely used for accelerating HPC and deep learning applications.
There is a plethora of previous works on the performance tuning of systolic arrays, but …

Specialized accelerators are increasingly attractive solutions to continue expected
generational performance scaling with slowing technology scaling. Existing programmable …