Satellite DNA evolution: old ideas, new approaches

SS Lower, MP McGurk, AG Clark… - Current opinion in genetics …, 2018 - Elsevier
A substantial portion of the genomes of most multicellular eukaryotes consists of large arrays
of tandemly repeated sequence, collectively called satellite DNA. The processes generating …

Retrotransposons in plant genomes: structure, identification, and classification through bioinformatics and machine learning

S Orozco-Arias, G Isaza, R Guyot - International journal of molecular …, 2019 - mdpi.com
Transposable elements (TEs) are genomic units able to move within the genome of virtually
all organisms. Due to their natural repetitive numbers and their high structural diversity, the …

Decoding the role of satellite DNA in genome architecture and plasticity—An evolutionary and clinical affair

S Louzada, M Lopes, D Ferreira, F Adega, A Escudeiro… - Genes, 2020 - mdpi.com
Repetitive DNA is a major organizational component of eukaryotic genomes, being
intrinsically related with their architecture and evolution. Tandemly repeated satellite DNAs …

Repeatome evolution across space and time: Unravelling repeats dynamics in the plant genus Erythrostemon Klotzsch (Leguminosae Juss)

N Castro, B Vilela, Y Mata‐Sucre, A Marques… - Molecular …, 2024 - Wiley Online Library
Fluctuations in genomic repetitive fractions (repeatome) are known to impact several facets
of evolution, such as ecological adaptation and speciation processes. Therefore …

Comparative repeatome analysis reveals new evidence on genome evolution in wild diploid Arachis (Fabaceae) species

SS Samoluk, M Vaio, AM Ortíz, LMI Chalup, G Robledo… - Planta, 2022 - Springer
Main conclusion Opposing changes in the abundance of satellite DNA and long terminal
repeat (LTR) retroelements are the main contributors to the variation in genome size and …

Data integration in poplar:'omics layers and integration strategies

D Weighill, TJ Tschaplinski, GA Tuskan… - Frontiers in …, 2019 - frontiersin.org
Populus trichocarpa is an important biofuel feedstock that has been the target of extensive
research and is emerging as a model organism for plants, especially woody perennials. This …

Genome‐wide identification and characterization of exapted transposable elements in the large genome of sunflower (Helianthus annuus L.)

M Ventimiglia, G Marturano, A Vangelisti… - The Plant …, 2023 - Wiley Online Library
Transposable elements (TEs) are an important source of genome variability, playing many
roles in the evolution of eukaryotic species. Besides well‐known phenomena, TEs may …

Characterisation of LTR-Retrotransposons of Stevia rebaudiana and Their Use for the Analysis of Genetic Variability

S Simoni, C Clemente, G Usai, A Vangelisti… - International Journal of …, 2022 - mdpi.com
Stevia rebaudiana is one of the most important crops belonging to the Asteraceae family.
Stevia is cultivated all over the world as it represents a valid natural alternative to artificial …

Arbuscular mycorrhizal fungi induce the expression of specific retrotransposons in roots of sunflower (Helianthus annuus L.)

A Vangelisti, F Mascagni, T Giordani, C Sbrana… - PloS One, 2019 - journals.plos.org
Retrotransposon expression during arbuscular mycorrhizal (AM) fungal colonisation of
sunflower roots (Helianthus annuus) was analysed using Illumina RNA-Seq, in order to …

A computational genome-wide analysis of long terminal repeats retrotransposon expression in sunflower roots (Helianthus annuus L.)

F Mascagni, A Vangelisti, G Usai, T Giordani… - Genetica, 2020 - Springer
Long terminal repeats (LTR) retrotransposons have a major role in determining genome
size, structure and function, thanks to their ability to transpose. We performed a meta …