Multi-atlas segmentation of biomedical images: a survey

JE Iglesias, MR Sabuncu - Medical image analysis, 2015 - Elsevier
Abstract Multi-atlas segmentation (MAS), first introduced and popularized by the pioneering
work of Rohlfing, et al.(2004), Klein, et al.(2005), and Heckemann, et al.(2006), is becoming …

Automated segmentation of tissues using CT and MRI: a systematic review

L Lenchik, L Heacock, AA Weaver, RD Boutin… - Academic radiology, 2019 - Elsevier
Rationale and Objectives The automated segmentation of organs and tissues throughout the
body using computed tomography and magnetic resonance imaging has been rapidly …

Recent advances on optic nerve magnetic resonance imaging and post-processing

LS Chow, MNJ Paley - Magnetic Resonance Imaging, 2021 - Elsevier
The optic nerve is known to be one of the largest nerve bundles in the human central
nervous system. There have been many studies of optic nerve imaging and post-processing …

NABS: non-local automatic brain hemisphere segmentation

JE Romero, JV Manjón, J Tohka, P Coupé… - Magnetic resonance …, 2015 - Elsevier
In this paper, we propose an automatic method to segment the five main brain sub-regions
(ie left/right hemispheres, left/right cerebellum and brainstem) from magnetic resonance …

Three-dimensional orbital wall modeling using paranasal sinus segmentation

H Kim, T Son, J Lee, HA Kim, H Cho, WS Jeong… - Journal of Cranio …, 2019 - Elsevier
Purpose Three-dimensional orbital wall modeling is a time-consuming process because of
the presence of pseudoforamina. We developed an automated three-dimensional modeling …

[HTML][HTML] Multi-scale hippocampal parcellation improves atlas-based segmentation accuracy

AJ Plassard, M McHugo, S Heckers… - Proceedings of SPIE …, 2017 - ncbi.nlm.nih.gov
Known for its distinct role in memory, the hippocampus is one of the most studied regions of
the brain. Recent advances in magnetic resonance imaging have allowed for high-contrast …

Automatic segmentation and quantification of the optic nerve on MRI using a 3D U-Net

S van Elst, CM de Bloeme, S Noteboom… - Journal of Medical …, 2023 - spiedigitallibrary.org
Purpose Pathological conditions associated with the optic nerve (ON) can cause structural
changes in the nerve. Quantifying these changes could provide further understanding of …

Disambiguating the optic nerve from the surrounding cerebrospinal fluid: Application to MS‐related atrophy

RL Harrigan, AJ Plassard, FW Bryan… - Magnetic resonance …, 2016 - Wiley Online Library
Purpose Our goal is to develop an accurate, automated tool to characterize the optic nerve
(ON) and cerebrospinal fluid (CSF) to better understand ON changes in disease. Methods …

Correlation of automated computed tomography volumetric analysis metrics with motility disturbances in thyroid eye disease

JJ Law, KM Mundy, AC Kupcha… - Ophthalmic Plastic & …, 2021 - journals.lww.com
Purpose: The authors sought to examine relationships between CT metrics derived via an
automated method and clinical parameters of extraocular muscle changes in thyroid eye …

Automated, open-source segmentation of the Hippocampus and amygdala with the open Vanderbilt archive of the temporal lobe

AJ Plassard, S Bao, M McHugo, L Beason-Held… - Magnetic resonance …, 2021 - Elsevier
Examining volumetric differences of the amygdala and anterior-posterior regions of the
hippocampus is important for understanding cognition and clinical disorders. However, the …