FRET as a biomolecular research tool—understanding its potential while avoiding pitfalls

WR Algar, N Hildebrandt, SS Vogel, IL Medintz - Nature methods, 2019 - nature.com
The applications of Förster resonance energy transfer (FRET) grow with each year.
However, different FRET techniques are not applied consistently, nor are results uniformly …

Genetically encoded fluorescent biosensors illuminate the spatiotemporal regulation of signaling networks

EC Greenwald, S Mehta, J Zhang - Chemical reviews, 2018 - ACS Publications
Cellular signaling networks are the foundation which determines the fate and function of
cells as they respond to various cues and stimuli. The discovery of fluorescent proteins over …

Patterning of the cell cortex by Rho GTPases

WM Bement, AB Goryachev, AL Miller… - … Reviews Molecular Cell …, 2024 - nature.com
Abstract The Rho GTPases—RHOA, RAC1 and CDC42—are small GTP binding proteins
that regulate basic biological processes such as cell locomotion, cell division and …

Systems analysis of RhoGEF and RhoGAP regulatory proteins reveals spatially organized RAC1 signalling from integrin adhesions

PM Müller, J Rademacher, RD Bagshaw… - Nature cell …, 2020 - nature.com
Rho GTPases are central regulators of the cytoskeleton and, in humans, are controlled by
145 multidomain guanine nucleotide exchange factors (RhoGEFs) and GTPase-activating …

Rationally engineered nucleic acid architectures for biosensing applications

M Xiao, W Lai, T Man, B Chang, L Li… - Chemical …, 2019 - ACS Publications
Development of biosensing platforms plays a key role in research settings for identification
of biomarkers and in clinical applications for diagnostics. Biosensors based on nucleic acids …

High-sensitivity measurements of multiple kinase activities in live single cells

S Regot, JJ Hughey, BT Bajar, S Carrasco, MW Covert - Cell, 2014 - cell.com
Increasing evidence has shown that population dynamics are qualitatively different from
single-cell behaviors. Reporters to probe dynamic, single-cell behaviors are desirable yet …

Defined extracellular matrix compositions support stiffness-insensitive cell spreading and adhesion signaling

JRW Conway, A Isomursu, G Follain… - Proceedings of the …, 2023 - National Acad Sciences
Integrin-dependent adhesion to the extracellular matrix (ECM) mediates mechanosensing
and signaling in response to altered microenvironmental conditions. In order to provide …

Frequency modulation of ERK activation dynamics rewires cell fate

H Ryu, M Chung, M Dobrzyński, D Fey… - Molecular systems …, 2015 - embopress.org
Transient versus sustained ERK MAP kinase (MAPK) activation dynamics induce
proliferation versus differentiation in response to epidermal (EGF) or nerve (NGF) growth …

Genetically encoded fluorescent indicators for imaging intracellular potassium ion concentration

Y Shen, SY Wu, V Rancic, A Aggarwal, Y Qian… - Communications …, 2019 - nature.com
Potassium ion (K+) homeostasis and dynamics play critical roles in biological activities. Here
we describe three genetically encoded K+ indicators. KIRIN1 (potassium (K) i on r atiometric …

Measuring signaling and RNA-seq in the same cell links gene expression to dynamic patterns of NF-κB activation

K Lane, D Van Valen, MM DeFelice, DN Macklin… - Cell systems, 2017 - cell.com
Signaling proteins display remarkable cell-to-cell heterogeneity in their dynamic responses
to stimuli, but the consequences of this heterogeneity remain largely unknown. For instance …