[PDF][PDF] The art and practice of structure‐based drug design: a molecular modeling perspective

RS Bohacek, C McMartin, WC Guida - Medicinal research reviews, 1996 - azevedolab.net
The conceptual basis for structure-based drug design was formulated 100 years ago by Emil
Fischer. 1 His" lock and key" hypothesis is a constantly recurring leitmotif in modern drug …

Approaches to the description and prediction of the binding affinity of small‐molecule ligands to macromolecular receptors

H Gohlke, G Klebe - Angewandte Chemie International Edition, 2002 - Wiley Online Library
The influence of a xenobiotic compound on an organism is usually summarized by the
expression biological activity. If a controlled, therapeutically relevant, and regulatory action …

Purine nucleoside phosphorylases: properties, functions, and clinical aspects

A Bzowska, E Kulikowska, D Shugar - Pharmacology & therapeutics, 2000 - Elsevier
The ubiquitous purine nucleoside phosphorylases (PNPs) play a key role in the purine
salvage pathway, and PNP deficiency in humans leads to an impairment of T-cell function …

LigBuilder: a multi-purpose program for structure-based drug design

R Wang, Y Gao, L Lai - Molecular modeling annual, 2000 - Springer
We have developed a new multi-purpose program, LigBuilder, for structure-based drug
design. Within the structural constraints of the target protein, LigBuilder builds up ligands …

SMoG: de novo design method based on simple, fast, and accurate free energy estimates. 1. Methodology and supporting evidence

RS DeWitte, EI Shakhnovich - Journal of the American Chemical …, 1996 - ACS Publications
In this paper, we present SMoG (S mall Mo lecule G rowth), a novel, straightforward method
for de novo lead design and the evidence for its effectiveness. It is based on a simple model …

Burger's medicinal chemistry and drug discovery

DJ Abraham, DP Rotella - 2003 - Wiley Online Library
Now Updated! Burger's Medicinal Chemistry, Drug Discovery and Development provides a
comprehensive source on medicinal chemistry and drug discovery and development. This …

What can we learn from molecular recognition in protein–ligand complexes for the design of new drugs?

HJ Böhm, G Klebe - Angewandte Chemie International Edition …, 1996 - Wiley Online Library
The understanding of noncovalent interactions in protein–ligand complexes is essential in
modern biochemistry and should contribute toward the discovery of new drugs. In the …

Information decay in molecular docking screens against holo, apo, and modeled conformations of enzymes

SL McGovern, BK Shoichet - Journal of medicinal chemistry, 2003 - ACS Publications
Molecular docking uses the three-dimensional structure of a receptor to screen a small
molecule database for potential ligands. The dependence of docking screens on the …

Structural analyses reveal two distinct families of nucleoside phosphorylases

MJ Pugmire, SE Ealick - Biochemical Journal, 2002 - portlandpress.com
The reversible phosphorolysis of purine and pyrimidine nucleosides is an important
biochemical reaction in the salvage pathway, which provides an alternative to the de novo …

One-third-the-sites transition-state inhibitors for purine nucleoside phosphorylase

RW Miles, PC Tyler, RH Furneaux… - Biochemistry, 1998 - ACS Publications
Genetic defects in human purine nucleoside phosphorylase cause T-cell deficiency as the
major phenotype. It has been proposed that efficient inhibitors of the enzyme might intervene …