Super-pangenome by integrating the wild side of a species for accelerated crop improvement

AW Khan, V Garg, M Roorkiwal, AA Golicz… - Trends in plant …, 2020 - cell.com
The pangenome provides genomic variations in the cultivated gene pool for a given species.
However, as the crop's gene pool comprises many species, especially wild relatives with …

A copy number variation map of the human genome

M Zarrei, JR MacDonald, D Merico… - Nature reviews …, 2015 - nature.com
A major contribution to the genome variability among individuals comes from deletions and
duplications—collectively termed copy number variations (CNVs)—which alter the diploid …

Improved pea reference genome and pan-genome highlight genomic features and evolutionary characteristics

T Yang, R Liu, Y Luo, S Hu, D Wang, C Wang… - Nature …, 2022 - nature.com
Complete and accurate reference genomes and annotations provide fundamental resources
for functional genomics and crop breeding. Here we report a de novo assembly and …

Consensus statement: chromosomal microarray is a first-tier clinical diagnostic test for individuals with developmental disabilities or congenital anomalies

DT Miller, MP Adam, S Aradhya, LG Biesecker… - The American Journal of …, 2010 - cell.com
Chromosomal microarray (CMA) is increasingly utilized for genetic testing of individuals with
unexplained developmental delay/intellectual disability (DD/ID), autism spectrum disorders …

Global variation in copy number in the human genome

R Redon, S Ishikawa, KR Fitch, L Feuk, GH Perry… - nature, 2006 - nature.com
Copy number variation (CNV) of DNA sequences is functionally significant but has yet to be
fully ascertained. We have constructed a first-generation CNV map of the human genome …

Relative impact of nucleotide and copy number variation on gene expression phenotypes

BE Stranger, MS Forrest, M Dunning, CE Ingle… - Science, 2007 - science.org
Extensive studies are currently being performed to associate disease susceptibility with one
form of genetic variation, namely, single-nucleotide polymorphisms (SNPs). In recent years …

The diploid genome sequence of an individual human

S Levy, G Sutton, PC Ng, L Feuk, AL Halpern… - PLoS …, 2007 - journals.plos.org
Presented here is a genome sequence of an individual human. It was produced from∼ 32
million random DNA fragments, sequenced by Sanger dideoxy technology and assembled …

How to interpret a genome-wide association study

TA Pearson, TA Manolio - Jama, 2008 - jamanetwork.com
Genome-wide association (GWA) studies use high-throughput genotyping technologies to
assay hundreds of thousands of single-nucleotide polymorphisms (SNPs) and relate them to …

Sensitive and accurate detection of copy number variants using read depth of coverage

S Yoon, Z Xuan, V Makarov, K Ye, J Sebat - Genome research, 2009 - genome.cshlp.org
Methods for the direct detection of copy number variation (CNV) genome-wide have become
effective instruments for identifying genetic risk factors for disease. The application of next …

Copy number variation: new insights in genome diversity

JL Freeman, GH Perry, L Feuk, R Redon… - Genome …, 2006 - genome.cshlp.org
DNA copy number variation has long been associated with specific chromosomal
rearrangements and genomic disorders, but its ubiquity in mammalian genomes was not …