[HTML][HTML] A cybergenetic framework for engineering intein-mediated integral feedback control systems

S Anastassov, M Filo, CH Chang… - Nature …, 2023 - nature.com
The ability of biological systems to tightly regulate targeted variables, despite external and
internal disturbances, is known as Robust Perfect Adaptation (RPA). Achieved frequently …

Building in vitro transcriptional regulatory networks by successively integrating multiple functional circuit modules

SW Schaffter, R Schulman - Nature chemistry, 2019 - nature.com
The regulation of cellular dynamics and responses to stimuli by genetic regulatory networks
suggests how in vitro chemical reaction networks might analogously direct the dynamics of …

[HTML][HTML] Cell-free synthetic biology platform for engineering synthetic biological circuits and systems

D Jeong, M Klocke, S Agarwal, J Kim, S Choi… - Methods and …, 2019 - mdpi.com
Synthetic biology integrates diverse engineering disciplines to create novel biological
systems for biomedical and technological applications. The substantial growth of the …

DNA-empowered synthetic cells as minimalistic life forms

A Samanta, L Baranda Pellejero, M Masukawa… - Nature Reviews …, 2024 - nature.com
Cells, the fundamental units of life, orchestrate intricate functions—motility, adaptation,
replication, communication, and self-organization within tissues. Originating from …

Constrained multistate sequence design for nucleic acid reaction pathway engineering

BR Wolfe, NJ Porubsky, JN Zadeh… - Journal of the …, 2017 - ACS Publications
We describe a framework for designing the sequences of multiple nucleic acid strands
intended to hybridize in solution via a prescribed reaction pathway. Sequence design is …

Computational design of nucleic acid feedback control circuits

B Yordanov, J Kim, RL Petersen, A Shudy… - ACS synthetic …, 2014 - ACS Publications
The design of synthetic circuits for controlling molecular-scale processes is an important
goal of synthetic biology, with potential applications in future in vitro and in vivo …

[PDF][PDF] Hard limits and performance tradeoffs in a class of antithetic integral feedback networks

N Olsman, AA Baetica, F Xiao, YP Leong, RM Murray… - Cell systems, 2019 - cell.com
Feedback regulation is pervasive in biology at both the organismal and cellular level. In this
article, we explore the properties of a particular biomolecular feedback mechanism called …

[HTML][HTML] A blueprint for a synthetic genetic feedback optimizer

A Gyorgy, A Menezes, M Arcak - Nature communications, 2023 - nature.com
Biomolecular control enables leveraging cells as biomanufacturing factories. Despite recent
advancements, we currently lack genetically encoded modules that can be deployed to …

Standardized excitable elements for scalable engineering of far-from-equilibrium chemical networks

SW Schaffter, KL Chen, J O'Brien, M Noble… - Nature Chemistry, 2022 - nature.com
Engineered far-from-equilibrium synthetic chemical networks that pulse or switch states in
response to environmental signals could precisely regulate the kinetics of chemical …

[PDF][PDF] Ultrasensitive molecular controllers for quasi-integral feedback

CC Samaniego, E Franco - Cell Systems, 2021 - cell.com
Feedback control has enabled the success of automated technologies by mitigating the
effects of variability, unknown disturbances, and noise. While it is known that biological …