The Diversity, Biogenesis, and Activities of Endogenous Silencing Small RNAs in Arabidopsis
NG Bologna, O Voinnet - Annual review of plant biology, 2014 - annualreviews.org
In eukaryotic RNA silencing, RNase-III classes of enzymes in the Dicer family process
double-stranded RNA of cellular or exogenous origin into small-RNA (sRNA) molecules …
double-stranded RNA of cellular or exogenous origin into small-RNA (sRNA) molecules …
miRNA biogenesis: a dynamic pathway
MicroRNAs (miRNAs) modulate plant homeostasis through the inactivation of specific
mRNAs, especially those encoding transcription factors. A delicate spatial/temporal balance …
mRNAs, especially those encoding transcription factors. A delicate spatial/temporal balance …
Mechanism of siRNA production by a plant Dicer-RNA complex in dicing-competent conformation
In eukaryotes, small RNAs (sRNAs) play critical roles in multiple biological processes. Dicer
endonucleases are a central part of sRNA biogenesis. In plants, DICER-LIKE PROTEIN 3 …
endonucleases are a central part of sRNA biogenesis. In plants, DICER-LIKE PROTEIN 3 …
A one precursor one siRNA model for Pol IV-dependent siRNA biogenesis
RNA-directed DNA methylation in Arabidopsis thaliana is driven by the plant-specific RNA
Polymerase IV (Pol IV). It has been assumed that a Pol IV transcript can give rise to multiple …
Polymerase IV (Pol IV). It has been assumed that a Pol IV transcript can give rise to multiple …
Identification of Pol IV and RDR2-dependent precursors of 24 nt siRNAs guiding de novo DNA methylation in Arabidopsis
In Arabidopsis thaliana, abundant 24 nucleotide small interfering RNAs (24 nt siRNA) guide
the cytosine methylation and silencing of transposons and a subset of genes. 24 nt siRNA …
the cytosine methylation and silencing of transposons and a subset of genes. 24 nt siRNA …
Plant dicer-like proteins: double-stranded RNA-cleaving enzymes for small RNA biogenesis
A Fukudome, T Fukuhara - Journal of Plant Research, 2017 - Springer
Dicer, a double-stranded RNA (dsRNA)-specific endoribonuclease, plays an essential role
in triggering both transcriptional and post-transcriptional gene silencing in eukaryotes by …
in triggering both transcriptional and post-transcriptional gene silencing in eukaryotes by …
Dicer-independent RNA-directed DNA methylation in Arabidopsis
DL Yang, G Zhang, K Tang, J Li, L Yang, H Huang… - Cell research, 2016 - nature.com
RNA-directed DNA methylation (RdDM) is an important de novo DNA methylation pathway
in plants. Small interfering RNAs (siRNAs) generated by Dicers from RNA polymerase IV …
in plants. Small interfering RNAs (siRNAs) generated by Dicers from RNA polymerase IV …
The plant siRNA landscape
H Vaucheret, O Voinnet - The Plant Cell, 2024 - academic.oup.com
Whereas micro (mi) RNAs are considered the clean, noble side of the small RNA world,
small interfering (si) RNAs are often seen as a noisy set of molecules whose barbarian …
small interfering (si) RNAs are often seen as a noisy set of molecules whose barbarian …
Epigenetic gene regulation in plants and its potential applications in crop improvement
H Zhang, JK Zhu - Nature Reviews Molecular Cell Biology, 2024 - nature.com
DNA methylation, also known as 5-methylcytosine, is an epigenetic modification that has
crucial functions in plant growth, development and adaptation. The cellular DNA methylation …
crucial functions in plant growth, development and adaptation. The cellular DNA methylation …
Enzymatic reactions of AGO4 in RNA-directed DNA methylation: siRNA duplex loading, passenger strand elimination, target RNA slicing, and sliced target retention
F Wang, HY Huang, J Huang, J Singh… - Genes & …, 2023 - genesdev.cshlp.org
RNA-directed DNA methylation in plants is guided by 24-nt siRNAs generated in parallel
with 23-nt RNAs of unknown function. We show that 23-nt RNAs function as passenger …
with 23-nt RNAs of unknown function. We show that 23-nt RNAs function as passenger …