Efficient data reconstruction: The bottleneck of large-scale application of DNA storage

B Cao, Y Zheng, Q Shao, Z Liu, L Xie, Y Zhao, B Wang… - Cell Reports, 2024 - cell.com
Over the past decade, the rapid development of DNA synthesis and sequencing
technologies has enabled preliminary use of DNA molecules for digital data storage …

Integrative genomics would strengthen AMR understanding through ONE health approach

CSC Liu, R Pandey - Heliyon, 2024 - cell.com
Emergence of drug-induced antimicrobial resistance (AMR) forms a crippling health and
economic crisis worldwide, causing high mortality from otherwise treatable diseases and …

Taxometer: Improving taxonomic classification of metagenomics contigs

S Kutuzova, M Nielsen, P Piera, JN Nissen… - Nature …, 2024 - nature.com
For taxonomy based classification of metagenomics assembled contigs, current methods
use sequence similarity to identify their most likely taxonomy. However, in the related field of …

Genome assembly in the telomere-to-telomere era

H Li, R Durbin - Nature Reviews Genetics, 2024 - nature.com
Genome sequences largely determine the biology and encode the history of an organism,
and de novo assembly—the process of reconstructing the genome sequence of an organism …

Flowtigs: safety in flow decompositions for assembly graphs

F Sena, E Ingervo, S Khan, A Prjibelski, S Schmidt… - iScience, 2024 - cell.com
A decomposition of a network flow is a set of weighted walks whose superposition equals
the flow. In this article, we give a simple and linear-time-verifiable complete characterization …

Metadetect: detection of Shiga toxin-producing Escherichia coli with novel metagenomics approaches and its application on dairy farms in France and Germany.

S Jaudou - 2023 - theses.hal.science
Les méthodologies actuelles de caractérisation d'Escherichia coli producteur de toxine
Shiga (STEC) nécessitent l'isolement de la souche, ce qui est compliqué par le fait qu'il …

Využití sekvenačních metod pro studium mikrobiálních komunit:(meta) genomové assembly a populační genomika u bakterií

M Vosyka - 2024 - dspace.cuni.cz
Sekvenace DNA z mikrobiálních komunit umožňuje kromě taxonomické profilace přítomných
mikrobiálních druhů také studium vnitropopulační ge-netické variability. Její popis je …

Community‐scale models of microbiomes: Articulating metabolic modelling and metagenome sequencing

K Cerk, P Ugalde‐Salas, CG Nedjad… - Microbial …, 2024 - Wiley Online Library
Building models is essential for understanding the functions and dynamics of microbial
communities. Metabolic models built on genome‐scale metabolic network reconstructions …