Computer-aided antibody design

D Kuroda, H Shirai, MP Jacobson… - … engineering, design & …, 2012 - academic.oup.com
Recent clinical trials using antibodies with low toxicity and high efficiency have raised
expectations for the development of next-generation protein therapeutics. However, the …

Recent advances in the understanding of egg allergens: basic, industrial, and clinical perspectives

Y Mine, M Yang - Journal of agricultural and food chemistry, 2008 - ACS Publications
The emergence of egg allergy has had both industrial and clinical implications. In
industrialized countries, egg allergy accounts for one of the most prevalent food …

Molecular basis for the preferential cleft recognition by dromedary heavy-chain antibodies

E De Genst, K Silence, K Decanniere… - Proceedings of the …, 2006 - National Acad Sciences
Clefts on protein surfaces are avoided by antigen-combining sites of conventional
antibodies, in contrast to heavy-chain antibodies (HCAbs) of camelids that seem to be …

Evolution of a designed retro-aldolase leads to complete active site remodeling

L Giger, S Caner, R Obexer, P Kast, D Baker… - Nature chemical …, 2013 - nature.com
Evolutionary advances are often fueled by unanticipated innovation. Directed evolution of a
computationally designed enzyme suggests that pronounced molecular changes can also …

[图书][B] Introduction to proteins: structure, function, and motion

A Kessel, N Ben-Tal - 2018 - taylorfrancis.com
Introduction to Proteins provides a comprehensive and state-of-the-art introduction to the
structure, function, and motion of proteins for students, faculty, and researchers at all levels …

COCOMAPS: a web application to analyze and visualize contacts at the interface of biomolecular complexes

A Vangone, R Spinelli, V Scarano, L Cavallo… - …, 2011 - academic.oup.com
Herein we present COCOMAPS, a novel tool for analyzing, visualizing and comparing the
interface in protein–protein and protein–nucleic acids complexes. COCOMAPS combines …

A structure‐based benchmark for protein–protein binding affinity

PL Kastritis, IH Moal, H Hwang, Z Weng… - Protein …, 2011 - Wiley Online Library
We have assembled a nonredundant set of 144 protein–protein complexes that have high‐
resolution structures available for both the complexes and their unbound components, and …

Optimizing antibody affinity and stability by the automated design of the variable light-heavy chain interfaces

S Warszawski, A Borenstein Katz, R Lipsh… - PLoS computational …, 2019 - journals.plos.org
Antibodies developed for research and clinical applications may exhibit suboptimal stability,
expressibility, or affinity. Existing optimization strategies focus on surface mutations …

Affinity maturation of antibodies assisted by in silico modeling

R Barderas, J Desmet, P Timmerman… - Proceedings of the …, 2008 - National Acad Sciences
Rational engineering methods can be applied with reasonable success to optimize
physicochemical characteristics of proteins, in particular, antibodies. Here, we describe a …

Food allergen epitope mapping

C Liu, SK Sathe - Journal of agricultural and food chemistry, 2018 - ACS Publications
With the increased global awareness and rise in food allergies, a multifold interest in food
allergens is evident. The presence of undeclared food allergens results in expensive food …