BC Karmakar, S Paul, S Basak, M Ghosh, P Mukherjee… - Gut Pathogens, 2023 - Springer
Abstract Background Eradication of Helicobacter pylori provides the most effective treatment for gastroduodenal diseases caused by H. pylori infection. Clarithromycin, a member of the …
W Chen, T Xie, Y Shao, F Chen - Gene, 2012 - Elsevier
Filamentous fungi are widely exploited in food industry due to their abilities to secrete large amounts of enzymes and metabolites. The recent availability of fungal genome sequences …
X Wu, S Wu, D Li, J Zhang, L Hou, J Ma, W Liu, D Ren… - Bmc Bioinformatics, 2010 - Springer
Background Codon bias is believed to play an important role in the control of gene expression. In Escherichia coli, some rare codons, which can limit the expression level of …
One of the central issues of evolutionary genomics is to find out the adaptive strategies of microorganisms to stabilize nucleic acid molecules under high temperature. Thermal …
Sequence dependence of solvent accessibility in globular and membrane proteins is well established. However, this important structural property has been poorly investigated in …
J Gao, W Wang - Annals of microbiology, 2012 - Springer
A comprehensive survey was carried out to identify orthologs of proteins from 526 bacterial and archaeal genomes, with the aim of investigating the mechanism of thermal adaptation of …
By analyzing the predicted gene expression levels of 33 prokaryotes with living temperature span from< 10° C to> 100° C, a universal positive correlation was found between the …
S Basak, I Mukherjee, M Choudhury, S Das - Bioinformation, 2008 - ncbi.nlm.nih.gov
Positive correlation between gene expression and synonymous codon usage bias is well documented in the literature. However, in the present study of Vibrio cholerae genome, we …
M Sautié Castellanos - 2020 - papyrus.bib.umontreal.ca
There are two main approaches to assess the robustness of genetic codes and coding sequences. The statistical approach is based on empirical estimates of probabilities …