Multifaceted activities of type I interferon are revealed by a receptor antagonist

D Levin, WM Schneider, HH Hoffmann, G Yarden… - Science …, 2014 - science.org
Type I interferons (IFNs), including various IFN-α isoforms and IFN-β, are a family of
homologous, multifunctional cytokines. IFNs activate different cellular responses by binding …

Unsupervised modeling of cell morphology dynamics for time-lapse microscopy

Q Zhong, AG Busetto, JP Fededa, JM Buhmann… - Nature …, 2012 - nature.com
Abstract Analysis of cellular phenotypes in large imaging data sets conventionally involves
supervised statistical methods, which require user-annotated training data. This paper …

Data-driven modelling of biological multi-scale processes

J Hasenauer, N Jagiella, S Hross… - Journal of Coupled …, 2015 - ingentaconnect.com
Biological processes involve a variety of spatial and temporal scales. A holistic
understanding of many biological processes therefore requires multi-scale models which …

Entrack: Probabilistic spherical regression with entropy regularization for fiber tractography

V Wegmayr, JM Buhmann - International Journal of Computer Vision, 2021 - Springer
White matter tractography, based on diffusion-weighted magnetic resonance images, is
currently the only available in vivo method to gather information on the structural brain …

Inferring causal metabolic signals that regulate the dynamic TORC 1‐dependent transcriptome

AP Oliveira, S Dimopoulos, AG Busetto… - Molecular systems …, 2015 - embopress.org
Cells react to nutritional cues in changing environments via the integrated action of
signaling, transcriptional, and metabolic networks. Mechanistic insight into signaling …

Learning representations from dendrograms

M Haghir Chehreghani, M Haghir Chehreghani - Machine Learning, 2020 - Springer
We propose unsupervised representation learning and feature extraction from dendrograms.
The commonly used Minimax distance measures correspond to building a dendrogram with …

Hierarchical correlation clustering and tree preserving embedding

MH Chehreghani… - Proceedings of the IEEE …, 2024 - openaccess.thecvf.com
We propose a hierarchical correlation clustering method that extends the well-known
correlation clustering to produce hierarchical clusters applicable to both positive and …

Cluster-based prediction of mathematical learning patterns

T Käser, AG Busetto, B Solenthaler, J Kohn… - Artificial Intelligence in …, 2013 - Springer
This paper introduces a method to predict and analyse students' mathematical performance
by detecting distinguishable subgroups of children who share similar learning patterns. We …

Model selection for Gaussian process regression

NS Gorbach, AA Bian, B Fischer, S Bauer… - … , GCPR 2017, Basel …, 2017 - Springer
Gaussian processes are powerful tools since they can model non-linear dependencies
between inputs, while remaining analytically tractable. A Gaussian process is characterized …

Shift of pairwise similarities for data clustering

M Haghir Chehreghani - Machine Learning, 2023 - Springer
Several clustering methods (eg, Normalized Cut and Ratio Cut) divide the Min Cut cost
function by a cluster dependent factor (eg, the size or the degree of the clusters), in order to …