Bioinformatics approaches and big data analytics opportunities in improving fisheries and aquaculture

MA Rather, D Agarwal, TA Bhat, IA Khan, I Zafar… - International Journal of …, 2023 - Elsevier
Aquaculture has witnessed an excellent growth rate during the last two decades and offers
huge potential to provide nutritional as well as livelihood security. Genomic research has …

Integrated metabolomic and gene expression analyses to study the effects of glycerol monolaurate on flesh quality in large yellow croaker (Larimichthys crocea)

J Wang, H Jiang, Y Alhamoud, Y Chen, J Zhuang, T Liu… - Food Chemistry, 2022 - Elsevier
To improve the quality of cultured large yellow croaker (Larimichthys crocea), this study was
performed to study the impacts of glycerol monolaurate (GML) on the nutritional value …

Diet Affects Muscle Quality and Growth Traits of Grass Carp (Ctenopharyngodon idellus): A Comparison Between Grass and Artificial Feed

H Zhao, J Xia, X Zhang, X He, L Li, R Tang… - Frontiers in …, 2018 - frontiersin.org
Fish muscle, the main edible parts with high protein level and low fat level, is consumed
worldwide. Diet contributes greatly to fish growth performance and muscle quality. In order to …

Integrated analysis of lncRNA and mRNA expression in rainbow trout families showing variation in muscle growth and fillet quality traits

A Ali, R Al-Tobasei, B Kenney, TD Leeds, M Salem - Scientific Reports, 2018 - nature.com
Muscle yield and quality traits are important for the aquaculture industry and consumers.
Genetic selection for these traits is difficult because they are polygenic and result from …

Evaluation of potential candidate genes involved in salinity tolerance in striped catfish (Pangasianodon hypophthalmus) using an RNA-Seq approach

TV Nguyen, H Jung, TM Nguyen, D Hurwood, P Mather - Marine Genomics, 2016 - Elsevier
Increasing salinity levels in freshwater and coastal environments caused by sea level rise
linked to climate change is now recognized to be a major factor that can impact fish growth …

Genome-wide association analysis with a 50K transcribed gene SNP-chip identifies QTL affecting muscle yield in rainbow trout

M Salem, R Al-Tobasei, A Ali, D Lourenco, G Gao… - Frontiers in …, 2018 - frontiersin.org
Detection of coding/functional SNPs that change the biological function of a gene may lead
to identification of putative causative alleles within QTL regions and discovery of genetic …

Evaluation of four novel protein sources as alternatives to soybean meal for two specifications of cage-farmed grass carp (Ctenopharyngodon idellus) deeds: Effect …

Z Fan, C Li, D Wu, J Li, L Wang, D Cao… - Frontiers in Marine …, 2022 - frontiersin.org
Costs associated with the use of soybean as a food source in aquaculture have imposed
constraints on its use in this industry. Thus, research is now focusing on alternative sources …

[HTML][HTML] Crosstalk among lncRNAs, microRNAs and mRNAs in the muscle 'degradome'of rainbow trout

B Paneru, A Ali, R Al-Tobasei, B Kenney, M Salem - Scientific reports, 2018 - nature.com
In fish, protein-coding and noncoding genes involved in muscle atrophy are not fully
characterized. In this study, we characterized coding and noncoding genes involved in …

Effects of feeding level and sexual maturation on expression of genes regulating growth mechanisms in rainbow trout (Oncorhynchus mykiss)

GM Weber, H Ma, J Birkett, BM Cleveland - Aquaculture, 2022 - Elsevier
The energy and nutrient demands of sexual maturation in salmonids requires a shift from
somatic growth to gonadal development, although a loss of skeletal muscle can be avoided …

Integrated analyses of DNA methylation and gene expression of rainbow trout muscle under variable ploidy and muscle atrophy conditions

M Salem, R Al-Tobasei, A Ali, B Kenney - Genes, 2022 - mdpi.com
Rainbow trout, Oncorhynchus mykiss, is an important cool, freshwater aquaculture species
used as a model for biological research. However, its genome reference has not been …