[PDF][PDF] Recent developments in the PHENIX software for automated crystallographic structure determination

PD Adams, K Gopal, RW Grosse-Kunstleve… - Journal of …, 2004 - journals.iucr.org
A new software system called PHENIX (Python-based Hierarchical ENvironment for
Integrated Xtallography) is being developed for the automation of crystallographic structure …

[PDF][PDF] PHENIX: building new software for automated crystallographic structure determination

PD Adams, RW Grosse-Kunstleve… - … Section D: Biological …, 2002 - journals.iucr.org
Structural genomics seeks to expand rapidly the number of protein structures in order to
extract the maximum amount of information from genomic sequence databases. The advent …

[PDF][PDF] Decision-making in structure solution using Bayesian estimates of map quality: the PHENIX AutoSol wizard

TC Terwilliger, PD Adams, RJ Read… - … Section D: Biological …, 2009 - journals.iucr.org
Estimates of the quality of experimental maps are important in many stages of structure
determination of macromolecules. Map quality is defined here as the correlation between a …

Automated MAD and MIR structure solution

TC Terwilliger, J Berendzen - Biological Crystallography, 1999 - journals.iucr.org
Obtaining an electron-density map from X-ray diffraction data can be difficult and time-
consuming even after the data have been collected, largely because MIR and MAD structure …

Siderophore-mediated iron transport: crystal structure of FhuA with bound lipopolysaccharide

AD Ferguson, E Hofmann, JW Coulton, K Diederichs… - science, 1998 - science.org
FhuA, the receptor for ferrichrome-iron in Escherichia coli, is a member of a family of integral
outer membrane proteins, which, together with the energy-transducing protein TonB …

[HTML][HTML] Transmembrane signaling across the ligand-gated FhuA receptor: crystal structures of free and ferrichrome-bound states reveal allosteric changes

KP Locher, B Rees, R Koebnik, A Mitschler, L Moulinier… - Cell, 1998 - cell.com
FhuA protein facilitates ligand-gated transport of ferrichrome-bound iron across Escherichia
coli outer membranes. X-ray analysis at 2.7 Å resolution reveals two distinct conformations …

Structural basis for the substrate specificity of tobacco etch virus protease

J Phan, A Zdanov, AG Evdokimov, JE Tropea… - Journal of Biological …, 2002 - ASBMB
Because of its stringent sequence specificity, the 3C-type protease from tobacco etch virus
(TEV) is frequently used to remove affinity tags from recombinant proteins. It is unclear …

SOLVE and RESOLVE: automated structure solution and density modification

TC Terwilliger - Methods in enzymology, 2003 - Elsevier
Publisher Summary The software packages SOLVE and RESOLVE comprise a suite for an
automated structure solution using multiple isomorphous replacement (MIR) …

[HTML][HTML] Sequence-specific RNA binding by a Nova KH domain: implications for paraneoplastic disease and the fragile X syndrome

HA Lewis, K Musunuru, KB Jensen, C Edo, H Chen… - Cell, 2000 - cell.com
The structure of a Nova protein K homology (KH) domain recognizing single-stranded RNA
has been determined at 2.4 Å resolution. Mammalian Nova antigens (1 and 2) constitute an …

Crystal structure of human p32, a doughnut-shaped acidic mitochondrial matrix protein

J Jiang, Y Zhang, AR Krainer… - Proceedings of the …, 1999 - National Acad Sciences
Human p32 (also known as SF2-associated p32, p32/TAP, and gC1qR) is a conserved
eukaryotic protein that localizes predominantly in the mitochondrial matrix. It is thought to be …