Extrachromosomal DNA amplifications in cancer

E Yi, R Chamorro González, AG Henssen… - Nature Reviews …, 2022 - nature.com
Extrachromosomal DNA (ecDNA) amplification is an important driver alteration in cancer. It
has been observed in most cancer types and is associated with worse patient outcome. The …

Extrachromosomal circular DNA: Current status and future prospects

Y Zhao, L Yu, S Zhang, X Su, X Zhou - Elife, 2022 - elifesciences.org
Extrachromosomal circular DNA (eccDNA) is a double-stranded DNA molecule found in
various organisms, including humans. In the past few decades, the research on eccDNA has …

Extrachromosomal circular DNA in colorectal cancer: biogenesis, function and potential as therapeutic target

Y Chen, Q Qiu, J She, J Yu - Oncogene, 2023 - nature.com
Extrachromosomal circular DNA (ecDNA) has gained renewed interest since its discovery
more than half a century ago, emerging as critical driver of tumor evolution. ecDNA is highly …

BIND&MODIFY: a long-range method for single-molecule mapping of chromatin modifications in eukaryotes

Z Weng, F Ruan, W Chen, Z Chen, Y Xie, M Luo, Z Xie… - Genome Biology, 2023 - Springer
Epigenetic modifications of histones are associated with development and pathogenesis of
disease. Existing approaches cannot provide insights into long-range interactions and …

Extrachromosomal DNA (ecDNA): Unveiling its role in cancer progression and implications for early detection

S Wu, T Tao, L Zhang, X Zhu, X Zhou - Heliyon, 2023 - cell.com
Extrachromosomal DNA (ecDNA) is a special class of circular DNA in eukaryotes, which is
independent of conventional chromosomes. These circular molecules play important roles in …

Methods, bioinformatics tools and databases in ecDNA research: an overview

X Zhao, H Zhao, Y Liu, Z Guo - Computers in Biology and Medicine, 2023 - Elsevier
Extrachromosomal DNA (ecDNA), derived from chromosomes, is a cancer-specific circular
DNA molecule. EcDNA drives tumor initiation and progression, which is associated with …

[HTML][HTML] Advances in sequencing-based studies of microDNA and ecDNA: databases, identification methods, and integration with single-cell analysis

R Jiang, M Yang, S Zhang, M Huang - Computational and Structural …, 2023 - Elsevier
Extrachromosomal circular DNA (eccDNA) is a class of circular DNA molecules that
originate from genomic DNA but are separate from chromosomes. They are common in …

ATACAmp: a tool for detecting ecDNA/HSRs from bulk and single-cell ATAC-seq data

H Cheng, W Ma, K Wang, H Chu, G Bao, Y Liao… - BMC genomics, 2023 - Springer
Background High oncogene expression in cancer cells is a major cause of rapid tumor
progression and drug resistance. Recent cancer genome research has shown that …

Exploring the potential of extrachromosomal DNA as a novel oncogenic driver

H Zhu, L Huangfu, J Chen, J Ji, X Xing - Science China Life Sciences, 2024 - Springer
Extrachromosomal DNA (ecDNA) is a form of circular DNA mostly found in tumor cells.
Unlike the typical chromosomal DNA, ecDNA is circular, self-replicating, and carries …

Decoding the genomic enigma: Approaches to studying extrachromosomal circular DNA

XQ Yuan, N Zhou, SJ Song, YX Xie, SQ Chen, TF Yang… - Heliyon, 2024 - cell.com
Extrachromosomal circular DNA (eccDNA), a pervasive yet enigmatic component of the
eukaryotic genome, exists autonomously from its chromosomal counterparts. Ubiquitous in …