Leveraging protein dynamics to identify functional phosphorylation sites using deep learning models
Accurate prediction of post-translational modifications (PTMs) is of great significance in
understanding cellular processes, by modulating protein structure and dynamics …
understanding cellular processes, by modulating protein structure and dynamics …
Research progress in protein posttranslational modification site prediction
Posttranslational modifications (PTMs) play an important role in regulating protein folding,
activity and function and are involved in almost all cellular processes. Identification of PTMs …
activity and function and are involved in almost all cellular processes. Identification of PTMs …
UbiSitePred: A novel method for improving the accuracy of ubiquitination sites prediction by using LASSO to select the optimal Chou's pseudo components
Ubiquitination is an essential process in protein post-translational modification, which plays
a crucial role in cell life activities, such as proteasomal degradation, transcriptional …
a crucial role in cell life activities, such as proteasomal degradation, transcriptional …
DeepUbi: a deep learning framework for prediction of ubiquitination sites in proteins
Background Protein ubiquitination occurs when the ubiquitin protein binds to a target protein
residue of lysine (K), and it is an important regulator of many cellular functions, such as …
residue of lysine (K), and it is an important regulator of many cellular functions, such as …
GPS-Uber: a hybrid-learning framework for prediction of general and E3-specific lysine ubiquitination sites
As an important post-translational modification, lysine ubiquitination participates in
numerous biological processes and is involved in human diseases, whereas the site …
numerous biological processes and is involved in human diseases, whereas the site …
Incorporating deep learning with word embedding to identify plant ubiquitylation sites
Protein ubiquitylation is an important posttranslational modification (PTM), which is involved
in diverse biological processes and plays an essential role in the regulation of physiological …
in diverse biological processes and plays an essential role in the regulation of physiological …
[PDF][PDF] Journal of Mountain Area Research
ABSTRACT A recent line of research has focused on Ubiquitination, a pervasive and
proteasome-mediated protein degradation that controls apoptosis and is crucial in the …
proteasome-mediated protein degradation that controls apoptosis and is crucial in the …
Large-scale prediction of protein ubiquitination sites using a multimodal deep architecture
Background Ubiquitination, which is also called “lysine ubiquitination”, occurs when an
ubiquitin is attached to lysine (K) residues in targeting proteins. As one of the most important …
ubiquitin is attached to lysine (K) residues in targeting proteins. As one of the most important …
UbiComb: a hybrid deep learning model for predicting plant-specific protein ubiquitylation sites
Protein ubiquitylation is an essential post-translational modification process that performs a
critical role in a wide range of biological functions, even a degenerative role in certain …
critical role in a wide range of biological functions, even a degenerative role in certain …
Lysine 222 in PPAR γ1 functions as the key site of MuRF2-mediated ubiquitination modification
Y Fan, F Xu, R Wang, J He - Scientific Reports, 2023 - nature.com
Peroxisome proliferator-activated receptor gamma (PPAR γ) plays key roles in the
development, physiology, reproduction, and homeostasis of organisms. Its expression and …
development, physiology, reproduction, and homeostasis of organisms. Its expression and …