Chromatin and transcription in yeast

OJ Rando, F Winston - Genetics, 2012 - academic.oup.com
Understanding the mechanisms by which chromatin structure controls eukaryotic
transcription has been an intense area of investigation for the past 25 years. Many of the key …

Histone chaperones: modulators of chromatin marks

N Avvakumov, A Nourani, J Côté - Molecular cell, 2011 - cell.com
The many factors that control chromatin biology play key roles in essential nuclear functions
like transcription, DNA damage response and repair, recombination, and replication and are …

The endonuclease Cue2 cleaves mRNAs at stalled ribosomes during No Go Decay

KN D'Orazio, CCC Wu, N Sinha, R Loll-Krippleber… - Elife, 2019 - elifesciences.org
Translation of problematic sequences in mRNAs leads to ribosome collisions that trigger a
series of quality control events including ribosome rescue, degradation of the stalled …

Nucleosome loss leads to global transcriptional up-regulation and genomic instability during yeast aging

Z Hu, K Chen, Z Xia, M Chavez, S Pal… - Genes & …, 2014 - genesdev.cshlp.org
All eukaryotic cells divide a finite number of times, although the mechanistic basis of this
replicative aging remains unclear. Replicative aging is accompanied by a reduction in …

Distinct elongation stalls during translation are linked with distinct pathways for mRNA degradation

AJ Veltri, KN D'orazio, LN Lessen, R Loll-Krippleber… - Elife, 2022 - elifesciences.org
Key protein adapters couple translation to mRNA decay on specific classes of problematic
mRNAs in eukaryotes. Slow decoding on non-optimal codons leads to codon-optimality …

Global gene deletion analysis exploring yeast filamentous growth

O Ryan, RS Shapiro, CF Kurat, D Mayhew… - Science, 2012 - science.org
The dimorphic switch from a single-cell budding yeast to a filamentous form enables
Saccharomyces cerevisiae to forage for nutrients and the opportunistic pathogen Candida …

Synthetic genetic array (SGA) analysis in Saccharomyces cerevisiae and Schizosaccharomyces pombe

A Baryshnikova, M Costanzo, S Dixon… - Methods in …, 2010 - Elsevier
A genetic interaction occurs when the combination of two mutations leads to an unexpected
phenotype. Screens for synthetic genetic interactions have been used extensively to identify …

Systematic dissection of roles for chromatin regulators in a yeast stress response

A Weiner, HV Chen, CL Liu, A Rahat, A Klien, L Soares… - 2012 - journals.plos.org
Packaging of eukaryotic genomes into chromatin has wide-ranging effects on gene
transcription. Curiously, it is commonly observed that deletion of a global chromatin …

The histone shuffle: histone chaperones in an energetic dance

C Das, JK Tyler, MEA Churchill - Trends in biochemical sciences, 2010 - cell.com
Our genetic information is tightly packaged into a rather ingenious nucleoprotein complex
called chromatin in a manner that enables it to be rapidly accessed during genomic …

New functions for an old variant: no substitute for histone H3. 3

SJ Elsaesser, AD Goldberg, CD Allis - Current opinion in genetics & …, 2010 - Elsevier
Histone proteins often come in different variants serving specialized functions in addition to
their fundamental role in packaging DNA. The metazoan histone H3. 3 has been most …