Xylanases, xylanase families and extremophilic xylanases

T Collins, C Gerday, G Feller - FEMS microbiology reviews, 2005 - academic.oup.com
Xylanases are hydrolytic enzymes which randomly cleave the β 1, 4 backbone of the
complex plant cell wall polysaccharide xylan. Diverse forms of these enzymes exist …

The TetR family of transcriptional repressors

JL Ramos, M Martínez-Bueno… - Microbiology and …, 2005 - Am Soc Microbiol
We have developed a general profile for the proteins of the TetR family of repressors. The
stretch that best defines the profile of this family is made up of 47 amino acid residues that …

The B73 maize genome: complexity, diversity, and dynamics

PS Schnable, D Ware, RS Fulton, JC Stein, F Wei… - science, 2009 - science.org
We report an improved draft nucleotide sequence of the 2.3-gigabase genome of maize, an
important crop plant and model for biological research. Over 32,000 genes were predicted …

SWISS-MODEL: an automated protein homology-modeling server

T Schwede, J Kopp, N Guex… - Nucleic acids research, 2003 - academic.oup.com
Abstract SWISS-MODEL (http://swissmodel. expasy. org) is a server for automated
comparative modeling of three-dimensional (3D) protein structures. It pioneered the field of …

Automated genome annotation and pathway identification using the KEGG Orthology (KO) as a controlled vocabulary

X Mao, T Cai, JG Olyarchuk, L Wei - Bioinformatics, 2005 - academic.oup.com
Motivation: High-throughput technologies such as DNA sequencing and microarrays have
created the need for automated annotation of large sets of genes, including whole genomes …

UniProt: the universal protein knowledgebase

R Apweiler, A Bairoch, CH Wu, WC Barker… - Nucleic acids …, 2004 - academic.oup.com
To provide the scientific community with a single, centralized, authoritative resource for
protein sequences and functional information, the Swiss‐Prot, TrEMBL and PIR protein …

[HTML][HTML] Human microRNA targets

B John, AJ Enright, A Aravin, T Tuschl, C Sander… - PLoS …, 2004 - journals.plos.org
MicroRNAs (miRNAs) interact with target mRNAs at specific sites to induce cleavage of the
message or inhibit translation. The specific function of most mammalian miRNAs is …

Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution

Project management: Fulton Lucinda A. 1 Mardis … - Nature, 2004 - nature.com
We present here a draft genome sequence of the red jungle fowl, Gallus gallus. Because the
chicken is a modern descendant of the dinosaurs and the first non-mammalian amniote to …

Ultraconserved elements in the human genome

G Bejerano, M Pheasant, I Makunin, S Stephen… - Science, 2004 - science.org
There are 481 segments longer than 200 base pairs (bp) that are absolutely conserved
(100% identity with no insertions or deletions) between orthologous regions of the human …

Genome sequence of the Brown Norway rat yields insights into mammalian evolution

University of Utah Weiss Robert B. 14 Dunn Diane M … - Nature, 2004 - nature.com
The laboratory rat (Rattus norvegicus) is an indispensable tool in experimental medicine
and drug development, having made inestimable contributions to human health. We report …