Three-dimensional chromatin packing and positioning of plant genomes

ES Doğan, C Liu - Nature plants, 2018 - nature.com
Abstract Information and function of a genome are not only decorated with epigenetic marks
in the linear DNA sequence but also in their non-random spatial organization in the nucleus …

Understanding 3D genome organization and its effect on transcriptional gene regulation under environmental stress in plant: a chromatin perspective

S Kumar, S Kaur, K Seem, S Kumar… - Frontiers in Cell and …, 2021 - frontiersin.org
The genome of a eukaryotic organism is comprised of a supra-molecular complex of
chromatin fibers and intricately folded three-dimensional (3D) structures. Chromosomal …

Polyploidy, the nucleotype, and novelty: the impact of genome doubling on the biology of the cell

JJ Doyle, JE Coate - International Journal of Plant Sciences, 2019 - journals.uchicago.edu
Polyploidy is a key mechanism of genome evolution and speciation, particularly in plants.
Many aspects of polyploidy have been elucidated with the tools that have become available …

Plant lamin-like proteins mediate chromatin tethering at the nuclear periphery

B Hu, N Wang, X Bi, ES Karaaslan, AL Weber, W Zhu… - Genome Biology, 2019 - Springer
Background The nuclear envelope not only serves as a physical barrier separating nuclear
content from the cytoplasm but also plays critical roles in modulating the three-dimensional …

The large GTPase AtGBPL3 links nuclear envelope formation and morphogenesis to transcriptional repression

TM Reimann, C Müdsam, C Schachtler, S Ince, H Sticht… - Nature Plants, 2023 - nature.com
Guanylate binding proteins (GBPs) are prominent regulators of immunity not known to be
required for nuclear envelope formation and morphogenesis. Here we identify the …

Emerging roles of chromatin in the maintenance of genome organization and function in plants

Z Vergara, C Gutierrez - Genome Biology, 2017 - Springer
Chromatin is not a uniform macromolecular entity; it contains different domains
characterized by complex signatures of DNA and histone modifications. Such domains are …

Plant 3D genomics: the exploration and application of chromatin organization

L Pei, G Li, K Lindsey, X Zhang, M Wang - New Phytologist, 2021 - Wiley Online Library
Eukaryotic genomes are highly folded for packing into higher‐order chromatin structures in
the nucleus. With the emergence of state‐of‐the‐art chromosome conformation capture …

Telomeres and subtelomeres dynamics in the context of early chromosome interactions during meiosis and their implications in plant breeding

M Aguilar, P Prieto - Frontiers in Plant Science, 2021 - frontiersin.org
Genomic architecture facilitates chromosome recognition, pairing, and recombination.
Telomeres and subtelomeres play an important role at the beginning of meiosis in specific …

The chromatin-associated protein PWO1 interacts with plant nuclear lamin-like components to regulate nuclear size

P Mikulski, ML Hohenstatt, S Farrona… - The Plant …, 2019 - academic.oup.com
Spatial organization of chromatin contributes to gene regulation of many cellular processes
and includes a connection of chromatin with the nuclear lamina (NL). The NL is a protein …

Behind the stoNE wall: A fervent activity for nuclear lipids

K Samardak, J Bâcle, M Moriel-Carretero - Biochimie, 2024 - Elsevier
The four main types of biomolecules are nucleic acids, proteins, carbohydrates and lipids.
The knowledge about their respective interactions is as important as the individual …