Alzheimer's disease-associated U1 snRNP splicing dysfunction causes neuronal hyperexcitability and cognitive impairment

PC Chen, X Han, TI Shaw, Y Fu, H Sun, M Niu, Z Wang… - Nature aging, 2022 - nature.com
Recent proteome and transcriptome profiling of Alzheimer's disease (AD) brains reveals
RNA splicing dysfunction and U1 small nuclear ribonucleoprotein (snRNP) pathology …

Dissecting detergent-insoluble proteome in Alzheimer's disease by TMTc-corrected quantitative mass spectrometry

M Zaman, Y Fu, PC Chen, H Sun, S Yang, Z Wu… - Molecular & Cellular …, 2023 - ASBMB
Protein aggregation of amyloid-β peptides and tau are pathological hallmarks of Alzheimer's
disease (AD), which are often resistant to detergent extraction and thus enriched in the …

[HTML][HTML] CRISPR screens unveil nutrient-dependent lysosomal and mitochondrial nodes impacting intestinal tissue-resident memory CD8+ T cell formation

JL Raynor, N Collins, H Shi, C Guy, J Saravia, SA Lim… - Immunity, 2024 - cell.com
Nutrient availability and organelle biology direct tissue homeostasis and cell fate, but how
these processes orchestrate tissue immunity remains poorly defined. Here, using in vivo …

JUMPptm: Integrated software for sensitive identification of post‐translational modifications and its application in Alzheimer's disease study

S Poudel, D Vanderwall, ZF Yuan, Z Wu, J Peng… - …, 2023 - Wiley Online Library
Abstract Background: Mass spectrometry (MS)‐based proteomic analysis of
posttranslational modifications (PTMs) usually requires the pre‐enrichment of modified …

Identifying sex-specific serum patterns of Alzheimer's mice through deep TMT profiling and a concentration-dependent concatenation strategy

KK Dey, JM Yarbro, D Liu, X Han, Z Wang… - Journal of proteome …, 2023 - ACS Publications
Alzheimer's disease (AD) is the most prevalent form of dementia, disproportionately affecting
women in disease prevalence and progression. Comprehensive analysis of the serum …

Proteomics profiling reveals regulation of immune response to Salmonella enterica serovar Typhimurium infection in mice

H Huang, Z Even, Z Wang, L Li, A Erickson… - Infection and …, 2023 - Am Soc Microbiol
Regulation of the immune response to Salmonella enterica serovar Typhimurium (S.
Typhimurium) infection is a complex process, influenced by the interaction between genetic …

Tetraspanin Tspan8 restrains interferon signaling to stabilize intestinal epithelium by directing endocytosis of interferon receptor

J Min, S Yang, Y Cai, DR Vanderwall, Z Wu, S Li… - Cellular and Molecular …, 2023 - Springer
Inflammation can impair intestinal barrier, while increased epithelial permeability can lead to
inflammation. In this study, we found that the expression of Tspan8, a tetraspanin expressed …

DRPPM-EASY: A Web-Based Framework for Integrative Analysis of Multi-Omics Cancer Datasets

A Obermayer, L Dong, Q Hu, M Golden, JD Noble… - Biology, 2022 - mdpi.com
Simple Summary With the influx of multi-omics profiling, effective integration of these data
remains the bottleneck for omics-driven discovery. Thus, we developed DRPPM-EASY, an R …

In-Depth Blood Proteome Profiling by Extensive Fractionation and Multiplexed Quantitative Mass Spectrometry

X Zhang, H Sun, Z Wang, S Zhou, Y Fu… - … : Methods and Protocols, 2023 - Springer
Blood in the circulatory system carries information of physiological and pathological status of
the human body, so blood proteins are often used as biomarkers for diagnosis, prognosis …

Profiling Mouse Brain Single-Cell-Type Proteomes Via Adeno-Associated Virus-Mediated Proximity Labeling and Mass Spectrometry

HK Shrestha, H Sun, J Wang, J Peng - Mass Spectrometry Based Single …, 2024 - Springer
Single-cell-type proteomics is an emerging field of research that combines cell-type
specificity with the comprehensive proteome coverage offered by bulk proteomics. However …