The bacterial translation stress response

AL Starosta, J Lassak, K Jung… - FEMS microbiology …, 2014 - academic.oup.com
Throughout their life, bacteria need to sense and respond to environmental stress. Thus,
such stress responses can require dramatic cellular reprogramming, both at the …

Mechanisms of ribosome rescue in bacteria

KC Keiler - Nature Reviews Microbiology, 2015 - nature.com
Ribosomes that stall during translation need to be rescued to ensure that the protein
synthesis capacity of the cell is maintained. Stalling arises when ribosomes become trapped …

Architecture of a transcribing-translating expressome

R Kohler, RA Mooney, DJ Mills, R Landick, P Cramer - Science, 2017 - science.org
DNA transcription is functionally coupled to messenger RNA (mRNA) translation in bacteria,
but how this is achieved remains unclear. Here we show that RNA polymerase (RNAP) and …

Ribosome rescue pathways in bacteria

C Müller, C Crowe-McAuliffe, DN Wilson - Frontiers in microbiology, 2021 - frontiersin.org
Ribosomes that become stalled on truncated or damaged mRNAs during protein synthesis
must be rescued for the cell to survive. Bacteria have evolved a diverse array of rescue …

Evolutionary conservation of RNA sequence and structure

E Rivas - Wiley Interdisciplinary Reviews: RNA, 2021 - Wiley Online Library
An RNA structure prediction from a single‐sequence RNA folding program is not evidence
for an RNA whose structure is important for function. Random sequences have plausible …

Endogenous rRNA sequence variation can regulate stress response gene expression and phenotype

CM Kurylo, MM Parks, MF Juette, B Zinshteyn… - Cell reports, 2018 - cell.com
Prevailing dogma holds that ribosomes are uniform in composition and function. Here, we
show that nutrient limitation-induced stress in E. coli changes the relative expression of …

Control of ribosomal subunit rotation by elongation factor G

A Pulk, JHD Cate - Science, 2013 - science.org
Introduction During protein synthesis, the guanosine triphosphatase (GTPase) elongation
factor G (EF-G) promotes translocation of messenger RNA (mRNA) and transfer RNA (tRNA) …

RNA structure prediction using positive and negative evolutionary information

E Rivas - PLoS computational biology, 2020 - journals.plos.org
Knowing the structure of conserved structural RNAs is important to elucidate their function
and mechanism of action. However, predicting a conserved RNA structure remains …

Dynamics of translation by single ribosomes through mRNA secondary structures

C Chen, H Zhang, SL Broitman, M Reiche… - Nature structural & …, 2013 - nature.com
During protein synthesis, the ribosome translates nucleotide triplets in single-stranded
mRNA into polypeptide sequences. Strong downstream mRNA secondary structures, which …

Multiperspective smFRET reveals rate-determining late intermediates of ribosomal translocation

MR Wasserman, JL Alejo, RB Altman… - Nature structural & …, 2016 - nature.com
Directional translocation of the ribosome through the mRNA open reading frame is a critical
determinant of translational fidelity. This process entails a complex interplay of large-scale …