Serine protease mechanism and specificity

L Hedstrom - Chemical reviews, 2002 - ACS Publications
Almost one-third of all proteases can be classified as serine proteases, named for the
nucleophilic Ser residue at the active site. This mechanistic class was originally …

Irreversible inhibitors of serine, cysteine, and threonine proteases

JC Powers, JL Asgian, ÖD Ekici, KE James - Chemical reviews, 2002 - ACS Publications
Proteases or proteolytic enzymes form one of the largest and more important groups of
enzymes. Proteases selectively catalyze the hydrolysis of peptide bonds and can be divided …

Structural basis of substrate specificity in the serine proteases

JJ Perona, CS Craik - Protein Science, 1995 - Wiley Online Library
Abstract Structure‐based mutational analysis of serine protease specificity has produced a
large database of information useful in addressing biological function and in establishing a …

Automatic identification of secondary structure in globular proteins

M Levitt, J Greer - Journal of molecular biology, 1977 - Elsevier
A computer program is used to analyse automatically and objectively the atomic co-
ordinates of a large number of globular proteins in order to identify the regions of α-helix, β …

Site-directed mutagenesis and the role of the oxyanion hole in subtilisin.

P Bryan, MW Pantoliano, SG Quill… - Proceedings of the …, 1986 - National Acad Sciences
Oligonucleotide-directed mutagenesis was used to investigate the nature of transition state
stabilization in the catalytic mechanism of the serine protease, subtilisin BPN'. The gene for …

Intrahelical hydrogen bonding of serine, threonine and cysteine residues within α-helices and its relevance to membrane-bound proteins

TM Gray, BW Matthews - Journal of molecular biology, 1984 - Elsevier
A survey of known protein structures reveals that approximately 70% of serine residues and
at least 85%(potentially 100%) of threonine residues in helices make hydrogen bonds to …

Free energy perturbation calculations on binding and catalysis after mutating Asn 155 in subtilisin

SN Rao, UC Singh, PA Bash, PA Kollman - Nature, 1987 - nature.com
Site-directed mutagenesis is a very powerful approach to altering the biological functions of
proteins, the structural stability of proteins and the interactions of proteins with other …

Subtilisin—an enzyme designed to be engineered

JA Wells, DA Estell - Trends in biochemical sciences, 1988 - cell.com
Fig. 2. Diagram showing the rate-limiting acylation step (which defines kcat) for hydrolysis of
peptide bonds by subtilisin BPN'. For subtilisin BPN', deacylation is> 33 times faster than …

Importance of hydrogen-bond formation in stabilizing the transition state of subtilisin

JA Wells, BC Cunningham… - … Transactions of the …, 1986 - royalsocietypublishing.org
Structural studies on serine proteinases have shown that hydrogen bonds are involved in
stabilizing the charged tetrahedral intermediate in the transition-state complex. However …

Probing steric and hydrophobic effects on enzyme-substrate interactions by protein engineering

DA Estell, TP Graycar, JV Miller, DB Powers, JA Wells… - Science, 1986 - science.org
Steric and hydrophobic effects on substrate specificity were probed by protein engineering
of subtilisin. Subtilisin has broad peptidase specificity and contains a large hydrophobic …