AlphaDesign: A de novo protein design framework based on AlphaFold

M Jendrusch, JO Korbel, SK Sadiq - Biorxiv, 2021 - biorxiv.org
De novo protein design is a longstanding fundamental goal of synthetic biology, but has
been hindered by the difficulty in reliable prediction of accurate high-resolution protein …

Synthetic biology principles for the design of protein with novel structures and functions

W Zhou, T Šmidlehner, R Jerala - FEBS letters, 2020 - Wiley Online Library
Nature provides a large number of functional proteins that evolved during billions of years of
evolution. The diversity of natural proteins encompasses versatile functions and more than a …

Computational design of anti-CRISPR proteins with improved inhibition potency

J Mathony, Z Harteveld, C Schmelas… - Nature chemical …, 2020 - nature.com
Anti-CRISPR (Acr) proteins are powerful tools to control CRISPR–Cas technologies.
However, the available Acr repertoire is limited to naturally occurring variants. Here, we …

Genetic Algorithms Applied to Thermodynamic Rational Design of Mimetic Antibodies Based on the GB1 Domain of Streptococcal Protein G: An Atomistic Simulation …

AAE Santo, GT Feliciano - The Journal of Physical Chemistry B, 2021 - ACS Publications
The development of mimetic antibodies (MA) capable of combining the high affinity and
selectivity of antibodies with the small size of the peptides has enormous potential for …

A bottom-up approach for the de novo design of functional proteins

C Yang, F Sesterhenn, J Bonet, E van Aalen, L Scheller… - bioRxiv, 2020 - biorxiv.org
De novo protein design has enabled the creation of novel protein structures. To design
novel functional proteins, state-of-the-art approaches use natural proteins or first design …